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Ukbrest: Efficient And Streamlined Data Access For Reproducible Research In Large Biobanks

Milton Pividori, Hae Kyung Im
2018 Zenodo  
Large biobanks, such as UK Biobank with half a million participants, are changing the scale and availability of genotypic and phenotypic data for researchers to ask fundamental questions about the biology  ...  Here we propose a tool called ukbREST designed for the UK Biobank study (easily extensible to other biobanks), which allows authorized users to efficiently retrieve phenotypic and genetic data.  ...  Acknowledgements We gratefully acknowledge compute support and resources provided by Bionimbus [5] , the University of Chicago's Research Computing Center (RCC) and the Center for Research Informatics  ... 
doi:10.5281/zenodo.1336815 fatcat:aisujxgo6bgvxfhe3qjfhxgrei

Ukbrest: Efficient And Streamlined Data Access For Reproducible Research In Large Biobanks

Milton Pividori, Hae Kyung Im
2018 Zenodo  
Large biobanks, such as UK Biobank with half a million participants, are changing the scale and availability of genotypic and phenotypic data for researchers to ask fundamental questions about the biology  ...  Here we propose a tool called ukbREST designed for the UK Biobank study (easily extensible to other biobanks), which allows authorized users to efficiently retrieve phenotypic and genetic data.  ...  To address these problems we developed ukbREST, a user friendly tool that enables researchers to efficiently load the UK Biobank data into an SQL database, query any data field, and reproducibly document  ... 
doi:10.5281/zenodo.1336814 fatcat:pkyfmddopfaxleahagwvdl3zri