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trieFinder: an efficient program for annotating Digital Gene Expression (DGE) tags

Gabriel Renaud, Matthew C LaFave, Jin Liang, Tyra G Wolfsberg, Shawn M Burgess
2014 BMC Bioinformatics  
Digital Gene Expression (DGE) is a cost-effective, sequence-based approach for simple transcript quantification: by sequencing one read per molecule of RNA, this technique can be used to efficiently count  ...  Here, we present trieFinder, a program specifically designed to rapidly map, parse, and annotate DGE tags of various lengths against cDNA and/or genomic sequence databases.  ...  GR acknowledges financial support from NSERC for a PGS Doctoral scholarship. Author details  ... 
doi:10.1186/1471-2105-15-329 pmid:25311246 pmcid:PMC4287429 fatcat:jydn264u3rhedehadtr3ucbffa