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Digital Gene Expression (DGE) is a cost-effective, sequence-based approach for simple transcript quantification: by sequencing one read per molecule of RNA, this technique can be used to efficiently count ... Here, we present trieFinder, a program specifically designed to rapidly map, parse, and annotate DGE tags of various lengths against cDNA and/or genomic sequence databases. ... GR acknowledges financial support from NSERC for a PGS Doctoral scholarship. Author details ...doi:10.1186/1471-2105-15-329 pmid:25311246 pmcid:PMC4287429 fatcat:jydn264u3rhedehadtr3ucbffa