Filters








4 Hits in 3.3 sec

tagtog: interactive and text-mining-assisted annotation of gene mentions in PLOS full-text articles

J. M. Cejuela, P. McQuilton, L. Ponting, S. J. Marygold, R. Stefancsik, G. H. Millburn, B. Rost
2014 Database: The Journal of Biological Databases and Curation  
., Ponting,L. et al. tagtog: interactive and text-mining-assisted annotation of gene mentions in PLOS full-text articles.  ...  As part of the BioCreative IV Interactive Annotation Task, FlyBase has used tagtog to identify and extract mentions of Drosophila melanogaster gene symbols and names in full-text biomedical articles from  ...  Acknowledgements The authors would like to thank the BioCreative initiative for the opportunity to participate in the interactive annotation task and our interactive annotators Mary Schaeffer and Ritu  ... 
doi:10.1093/database/bau033 pmid:24715220 pmcid:PMC3978375 fatcat:ibmnb46bofeivdeqcatwpbr7ce

BioKC: a platform for quality controlled curation and annotation of systems biology models

Carlos Vega, Valentin Grouès, Marek Ostaszewski, Venkata Satagopam, Reinhard Schneider
2020 Zenodo  
Poster, slides, and video of the presentation of the talk BioKC: a platform for quality controlled curation and annotation of systems biology models during the workshop Biological network reconstruction  ...  , data visualization and analysis in biology and medicine (BioNetVisA) from the 19th European Conference on Computational Biology.  ...  J., … (2014). tagtog: interactive and textmining-assisted annotation of gene mentions in PLOS full-text articles.  ... 
doi:10.5281/zenodo.4033071 fatcat:yxmojuaebvbvnectyobojhlvcm

Biocuration: Distilling data into knowledge

2018 PLoS Biology  
Today, researchers are generating data at ever-faster rates because of advances in instrumentation and technology, coupled with decreases in production costs.  ...  From the time when Henry Oldenburg published the first scientific journal in 1665 (Proceedings of the Royal Society) to the founding of the United States National Library of Medicine in 1879 to the present  ...  suggestions, and eye for details helped to shape this article.  ... 
doi:10.1371/journal.pbio.2002846 pmid:29659566 pmcid:PMC5919672 fatcat:7oq5p3avend43k2wfbdm3ksz6y

LightTag: Text Annotation Platform

Tal Perry
2021 Proceedings of the 2021 Conference on Empirical Methods in Natural Language Processing: System Demonstrations   unpublished
"everyone wants to do the annotation of gene mentions in plos full-text articles.  ...  fill, Diana Akrong, Praveen Kumar Paritosh, and 2014. tagtog: interactive and text-mining-assisted Lora Mois Aroyo. 2021.  ... 
doi:10.18653/v1/2021.emnlp-demo.3 fatcat:nteblbwpafcdzbdgfasmyzqisi