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stingray: A modern Python library for spectral timing

Daniela Huppenkothen, Matteo Bachetti, Abigail Stevens, Simone Migliari, Paul Balm, Omar Hammad, Usman Khan, Himanshu Mishra, Haroon Rashid, Swapnil Sharma, Evandro Ribeiro, Ricardo Blanco
<span title="2019-06-11">2019</span> <i title="The Open Journal"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/3gk7mr6lhvdwnkgcicv7r2lrry" style="color: black;">Journal of Open Source Software</a> </i> &nbsp;
We aim for the library to be a platform for the implementation of future spectral-timing techniques.  ...  ABSTRACT This paper describes the design and implementation of stingray, a library in Python built to perform time series analysis and related tasks on astronomical light curves.  ...  This dearth of software for spectral timing motivated the development of stingray, 4 a library built entirely in the widely-used Python language and based on astropy functionality. stingray aims to make  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.21105/joss.01393">doi:10.21105/joss.01393</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/e7mywjsoevfq5eu5botjtag5ha">fatcat:e7mywjsoevfq5eu5botjtag5ha</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200309074516/https://www.rug.nl/research/portal/files/82271506/1901.07681_1_.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/27/61/27619ef94594650f2bd1270a38efbe802aafdba4.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.21105/joss.01393"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a>

Stingray: A Modern Python Library For Spectral Timing [article]

D. Huppenkothen, M. Bachetti, A. L. Stevens, S. Migliari, P. Balm, O. Hammad, U. M. Khan, H. Mishra, H. Rashid, S. Sharma, R. V. Blanco, E. M. Ribeiro
<span title="2019-01-23">2019</span> <i > arXiv </i> &nbsp; <span class="release-stage" >pre-print</span>
We aim for the library to be a platform for the implementation of future spectral-timing techniques.  ...  This paper describes the design and implementation of stingray, a library in Python built to perform time series analysis and related tasks on astronomical light curves.  ...  This dearth of software for spectral timing motivated the development of stingray, 4 a library built entirely in the widely-used Python language and based on astropy functionality. stingray aims to make  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/1901.07681v1">arXiv:1901.07681v1</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/xdqxzulg2bgqpo5uu3js7c2uxu">fatcat:xdqxzulg2bgqpo5uu3js7c2uxu</a> </span>
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Stingray: A Modern Python Library for Spectral Timing

Daniela Huppenkothen, Matteo Bachetti, Abigail L. Stevens, Simone Migliari, Paul Balm, Omar Hammad, Usman Mahmood Khan, Himanshu Mishra, Haroon Rashid, Swapnil Sharma, Evandro Martinez Ribeiro, Ricardo Valles Blanco
<span title="2019-08-09">2019</span> <i title="American Astronomical Society"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/otgg2yqymve23nrsflax26msgm" style="color: black;">Astrophysical Journal</a> </i> &nbsp;
We aim for the library to be a platform for the implementation of future spectral-timing techniques.  ...  ABSTRACT This paper describes the design and implementation of stingray, a library in Python built to perform time series analysis and related tasks on astronomical light curves.  ...  This dearth of software for spectral timing motivated the development of stingray, 4 a library built entirely in the widely-used Python language and based on astropy functionality. stingray aims to make  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3847/1538-4357/ab258d">doi:10.3847/1538-4357/ab258d</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/wlnzmemi2zhg7prmi3s3nhhxni">fatcat:wlnzmemi2zhg7prmi3s3nhhxni</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200305124315/https://pure.rug.nl/ws/files/82271506/1901.07681_1_.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/35/38/3538ece2802f5cb562c3540c3d304d1055046a93.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.3847/1538-4357/ab258d"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a>

Evolution of Vertebrate Phototransduction: Cascade Activation

Trevor D. Lamb, Hardip Patel, Aaron Chuah, Riccardo C. Natoli, Wayne I. L. Davies, Nathan S. Hart, Shaun P. Collin, David M. Hunt
<span title="2016-05-11">2016</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/4bimmtjdczetrfmnc3ijbmwpoy" style="color: black;">Molecular biology and evolution</a> </i> &nbsp;
of the five spectral classes of photoreceptor.  ...  Our analysis suggests that agnathans retain an additional representative (that has been lost in gnathostomes) in each of the gene families we studied; the evidence is strong for the G-protein a subunit  ...  We are very grateful to Professor Dan Larhammar and Dr David Lagman for helpful discussions, and to Professor Todd Oakley for advice at an early stage in this project.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/molbev/msw095">doi:10.1093/molbev/msw095</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/27189541">pmid:27189541</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC4948711/">pmcid:PMC4948711</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/fmr2qrz3mjdxnaxetfp6o5t5hi">fatcat:fmr2qrz3mjdxnaxetfp6o5t5hi</a> </span>
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Number 2 • Spring

An Overview
<span title="">2015</span> <span class="release-stage">unpublished</span>
Accordingly, good sources for additional guidance in this area include the "Joint Services Guide for Development of a SSRA" (available at acc.dau.mil/library) [1] and the Services' SMOs.  ...  Python) for blast data visualization and similar applications.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/5royzg4lavbhbilf36himbxb4q">fatcat:5royzg4lavbhbilf36himbxb4q</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20180421084435/https://www.dsiac.org/sites/default/files/journals/dsiac_journal-spring-web-5-1-15.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/8d/f3/8df329b3b8338b1b4468dcbdeb4d17c4a74b5ffe.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a>

Explanation-Guided Backdoor Poisoning Attacks Against Malware Classifiers [article]

Giorgio Severi, Jim Meyer, Scott Coull, Alina Oprea
<span title="2021-01-11">2021</span> <i > arXiv </i> &nbsp; <span class="release-stage" >pre-print</span>
Training pipelines for machine learning (ML) based malware classification often rely on crowdsourced threat feeds, exposing a natural attack injection point.  ...  Using multiple reference datasets for malware classification, including Windows PE files, PDFs, and Android applications, we demonstrate effective attacks against a diverse set of machine learning models  ...  Acknowledgments We would like to thank Jeff Johns for his detailed feedback on a draft of this paper and many discussions on backdoor poisoning attacks, and the anonymous reviewers for their insightful  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/2003.01031v3">arXiv:2003.01031v3</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/gbvwryhwzfdhxor2x6al5krkwe">fatcat:gbvwryhwzfdhxor2x6al5krkwe</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20210115111531/https://arxiv.org/pdf/2003.01031v3.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/44/5b/445b83d9ca03ef495c3a378d104a0a6548751d5e.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/2003.01031v3" title="arxiv.org access"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> arxiv.org </button> </a>

Poster Abstracts

<span title="2009-02-01">2009</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/3dfyhrm6gvb3tjt2lgl6e2rpzm" style="color: black;">Integrative and Comparative Biology</a> </i> &nbsp;
We tested for fry homing behavior using a mini-flume that exposed the fry to separate plumes of home aquarium water and foreign tank water and recorded how much time the fry spent in each plume for three  ...  Body mass changed differently over time among the groups (-0.13±0.08 g/d, -0.10±0.16 g/d, 0.01±0.26; RM ANOVA, time*group: F (12,168) =3.08, p<0.0006; for 3, 5.3, and 10%, respectively) as did pectoral  ...  Burmese pythons (Python molurus bivittatus) Multiple models have been proposed to explain the evolution of endothermy.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/icb/icp003">doi:10.1093/icb/icp003</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ogzq66svibfcjnht5szojhqk3q">fatcat:ogzq66svibfcjnht5szojhqk3q</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20181120041852/https://watermark.silverchair.com/icp003.pdf?token=AQECAHi208BE49Ooan9kkhW_Ercy7Dm3ZL_9Cf3qfKAc485ysgAAAkcwggJDBgkqhkiG9w0BBwagggI0MIICMAIBADCCAikGCSqGSIb3DQEHATAeBglghkgBZQMEAS4wEQQMix5eEr0mb4m9m-RPAgEQgIIB-gzHymCtAcAjARtv1jvgnC8iELkv-zh5YvW8AHkGUymU86yAa_81FFAuvCD5YLPnI4CYYyghSe3Jq8r-cp0z1gTFhEfiTJMomfBSXM6fwbvnAOJjrnATUFDhVQD6n_PorgllnFtnUFfQRUakboAUR9sepDwY4Q4UnLLi9bd8jRPVMjm0kIJJD1l-un2_DivNRhgo1dorRQPFFkCQpaG5TdJAwYZR1O-hubsUYkytcQH4de2yqn4U3aed82pVDIn50P099qDK_RlCXVira93twfTw7eoWWCH57i0Z3GvcmQy6YEPKyCufUEbNetob9M2XjG5HFC1uBJFweRVnNQoSlFOi0CG5p2LwS3BdHnynjmP4skoGL1W4AcCds2H4ecxZf8-CTEtQ-xnfw711sOyxCsD3D1FzJZY3Bv4rn4HVfEfY-hgxKQS4Yzvc0oYyVSd6caKxNR9gwzYEkBRL7vtG06kfz-yUjo1oOsVi6gUzI5HDs-zzDrc37aU5MgX400oX--1f_YbfeNC-xesStyhJOftikrd0G_UKKv62MCNPiTUQ6Y2Ps8Fcuv-7GgZhIEiOpk3ApbTg9TscFIko9wOJCG4wxqVZYApdUIz_FWf5Ow6vF2Y_DuVy8aCO2xTdhEmD-G0SHTF-C0dujA8XaAzQajwoSeKvfzst1dtt" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/icb/icp003"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> oup.com </button> </a>

Symposia and Oral Abstracts

<span title="2007-12-01">2007</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/3dfyhrm6gvb3tjt2lgl6e2rpzm" style="color: black;">Integrative and Comparative Biology</a> </i> &nbsp;
These symptoms come at a high cost in terms of time, energy, and nutrients, making this response the most likely type of immune function to trade-off with other costly activities, such as reproductive  ...  University; halamillo@wsu.edu A Molecular Timescale For Snakes Despite a rich fossil record and a flurry of recent studies of snake origins, patterns of snake diversification remain poorly understood.  ...  Understanding the ecological context of genome function and evolution is a major challenge for modern biology.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/icb/icm104">doi:10.1093/icb/icm104</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/uqdscbqihbeoxoo2unutfwtmdi">fatcat:uqdscbqihbeoxoo2unutfwtmdi</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20181030100456/https://watermark.silverchair.com/icm104.pdf?token=AQECAHi208BE49Ooan9kkhW_Ercy7Dm3ZL_9Cf3qfKAc485ysgAAAi4wggIqBgkqhkiG9w0BBwagggIbMIICFwIBADCCAhAGCSqGSIb3DQEHATAeBglghkgBZQMEAS4wEQQMao29-Rrjetkutu3VAgEQgIIB4QAqibhW3D_iOExcWu1erWKVUlrIIrskkGqTdc655q4r3JGvWrmvNDYx5W9dc382v4aBI2umBxGnjrx3Le1izcSJOrQ-VeQm1aXWdPm9Tu6x7h8ISaKVZdjEAjP58pxD2mqNRwIEpQH_pmLcYEjaW9kggnJg1PbW2X5d238VZ-cLXc9Cge2v4fwv1Y_cXlgY6Cv2yXN9uOszsotbz4SMVwLsp6LMS2x80Wk6Uc_ZQR5EQgG0zMLY08J40o_S6W94VuUXBKpQUGsIL7ePEq8skei84UOTv70uDVTaFKcloM7e7oEzgCLh5Vb17_T09QkY98dRhW6zcKWlQ9lT8AwZA3IWv-LPsm0hVGOdDhEArgeTN3CbOAM2p5ZdNB-OJkl2cesMo6OhBlt870PCMqCG97MM976Jx8SOlQy2n12DyUNBCt2ukGxtDZkb2m3iMhDy8Pz6XGEZ6TKIEDAI9IACTOo7ut6daGR5CCxZNwNGVB3vcGsQC1A0URNdm1vmFgchHuJjyKnOTpvKRzsz81S64WDobQslDhJLWQ1fJDdAJ4mGEkSzCWr6-bE1ysxqB-mhL3Vj1dTxXBvN4BFxz8ASUpoh_mt8ZmeDsHRxkBxFE2MRRYvkHbnt6SOQXnGOQhoJtNE" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/icb/icm104"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> oup.com </button> </a>

Proceedings of the 57th Annual Meeting of the Particle Therapy Cooperative Group (PTCOG)

<span title="2018-11-30">2018</span> <i title="International Journal of Particle Therapy"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/f55gzydwireipduqlmjsnmc4la" style="color: black;">International Journal of Particle Therapy</a> </i> &nbsp;
Methods: Since 2016, patients were scanned on a CT scanner with dual-layered spectral detectors (Philips IQon Spectral CT) installed in a radiation oncology department.  ...  The corresponding Bragg peaks were acquired in a water tank with a 12 cm diameter plane parallel ionization chamber (StingRay, IBA Dosimetry).  ...  This study evaluated measurements made with a 2D ion chamber array and a 1D motion platform in solid water.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.14338/2331-5180-5-2-000">doi:10.14338/2331-5180-5-2-000</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/31773035">pmid:31773035</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC6874191/">pmcid:PMC6874191</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/g7l3t34usnhdlpoa2y4r3rese4">fatcat:g7l3t34usnhdlpoa2y4r3rese4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20210526181518/http://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC6874191&amp;blobtype=pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/13/a5/13a50a5edd097c7184dc08a035efbb81f7943306.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.14338/2331-5180-5-2-000"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6874191" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Spatial and Temporal Distribution of Leaf Litter Anuran Communities and Potentially Influential Environmental Variables at Three Atlantic Forest Areas in Southeastern Brazil

Camila Rievers, Maria Rita, Silvério Pires, Paula Eterovick
<span title="">2011</span> <span class="release-stage">unpublished</span>
We first characterized and compared the three areas according to the variables studied, and then defined sample units that were not spatially correlated to test for spatial and temporal correlations between  ...  The best model to explain variation in anuran abundance included dry leaf litter biomass and rainfall, but still it did not explain a significant amount of variation.  ...  Calibration and validation spectral sets were developed at an 80/20 ratio, and validation unknowns tested against the spectral libraries.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/xiwipt3lpvejtdo672yjrwwgnm">fatcat:xiwipt3lpvejtdo672yjrwwgnm</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20180425001206/http://www.asih.org/sites/default/files/documents/meetings/jmih2011abstractsr-z6-3-11.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/cb/5d/cb5d51655e29dd3b3d8af173b0810b018188efad.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a>

Multi-dimensional Data Analysis in Electron Microscopy

Tomas Ostasevicius, Apollo-University Of Cambridge Repository, Apollo-University Of Cambridge Repository, Paul Anthony Midgley
<span title="2017-11-15">2017</span>
As a result, the Stark effect in quantum disks was mapped in a cathodoluminescence STEM experiment, and fully quantifiable 3D atomic distributions of a complex boron nitride core-shell nanoparticle were  ...  A novel Smart Adaptive Multi-dimensional Fitting (SAMFire) algorithm is presented and applied across a range of scanning transmission electron microscope (STEM) experiments.  ...  It uses state-of-the-art Python libraries to enable almost any type of analysis on both consumer-grade computers and large distributed computing environments, as long as the dataset fits on the disk.  ... 
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Research Implementation and Analysis of Security Issues in 5G Network Slicing using SDN and NFV

Apoorva Dinesh Kumar
<span title="">2021</span>
LibVMI [29] is a hypervisor introspection library for different platforms implemented with Python bindings in the C language.  ...  Link robustness and spectral efficiency. It provides the solution for the multipath fading.  ... 
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