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SPOT: Open Source framework for scientific data repository and interactive visualization
[article]
2018
arXiv
pre-print
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SPOT is an open source and free visual data analytics tool for multi-dimensional data-sets. Its web-based interface allows a quick analysis of complex data interactively. ...
It follows FAIR principles to allow reuse and comparison of the published data-sets. The software also support PostgreSQL database for scalability. ...
The aim of SPOT [1] is to provide a flexible data visualization framework to visualize such data. ...
arXiv:1809.08893v1
fatcat:gz5227znbfasrpikgreja6ibxi
spot: Open Source framework for scientific data repository and interactive visualization
2019
SoftwareX
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spot is an open source and free visual data analytics tool for multi-dimensional data-sets. Its web-based interface enables user to do a quick and interactive analysis of complex data. ...
It follows FAIR principles to allow reuse and comparison of the published data-sets. ...
The frontend is built on a number of open-source JavaScript packages, such as Chart.js, Vis.js, and Sigma.js for animated plots, and Ampersand.js and Material Design Lite for the interface. ...
doi:10.1016/j.softx.2019.04.006
fatcat:lcqormywpbcjlez5h7olfo5ohu
D5.4 SPOT Data Management Plan
[article]
2020
Zenodo
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The objective of D5.4 (the Data Management Plan) is to describe what data the SPOT project will collect and proceed, whether and how it will be exploited or made accessible for verification and reuse and ...
data will be collected, processed and/or generated, • which methodology & standards will be applied, • whether data will be shared/made open access, and • how data will be curated & preserved (including ...
The data files to be included in an open data repository will be made openly available through the ZENODO which is the open access repository of the Open Access Infrastructure for Research in Europe (https ...
doi:10.5281/zenodo.4456417
fatcat:4qckq35xenajzbewlc37amuwxe
Shedding Light on Blind Spots: Developing a Reference Architecture to Leverage Video Data for Process Mining
[article]
2021
arXiv
pre-print
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2020 pre-print arXiv:2010.11289v1 fatcat:ygyrykg55nc2xbsgf5pak4po3uOther Versions
In recent years, numerous methods have been proposed for analyzing structured process data. ...
Yet, in many cases, it is only the digitized parts of processes that are directly captured from process-aware information systems, and manual activities often result in blind spots. ...
Thanks to our realworld evaluation, we also make it easier to implement such a system by providing an end-to-end example of how to use open-source frameworks to most efficiently instantiate the proposed ...
arXiv:2010.11289v2
fatcat:acdpo2mznjbztoww7h7pvvj5ma
Libraries Fight Disinformation: An Analysis of Online Practices to Help Users' Generations in Spotting Fake News
2021
Societies
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To help citizens, these entities have developed a wide range of actions that range from online seminars, to learning how to evaluate the quality of a source, to video tutorials or the creation of repositories ...
Among the actions carried out to counteract misinformation, open-access materials that favor self-learning stand out. ...
Data Availability Statement: Not applicable.
Conflicts of Interest: The author declares no conflict of interest. ...
doi:10.3390/soc11040133
fatcat:shslyzqqzrbqtc6dgjv3o3dqde
Pepper Bacterial Spot Control by Bacillus velezensis: Bioprocess Solution
2020
Microorganisms
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Pepper bacterial spot is one of the most severe plant diseases in terms of infection persistence and economic losses when it comes to fresh pepper fruits used in nutrition and industrial processing. ...
The bioprocess solution developed at the laboratory scale investigated in this study represents a promising strategy for production of pepper bacterial spot biocontrol agent based on B. velezensis IP22 ...
Acknowledgments: Identification of Xanthomonas strains was conducted in the Laboratory for seed testing at the Institute of Field and Vegetable Crops (Novi Sad, Serbia) with kind assistance of Maja Ignjatov ...
doi:10.3390/microorganisms8101463
pmid:32987624
fatcat:pvrm7e4oubhjvnu6k4ke4teevq
Capture Knowledge on the Spot: Toward the Autonomous and Pervasive Service of Context-Rich Knowledge
2013
Automatika
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data. ...
This paper proposes a methodology to capture knowledge on the spot in an autonomous and pervasive manner by deploying the Smartphone as a sensor to monitor and gather dialogue-based knowledge and context ...
Therefore the word stemming and vector creating tool of Yale [14] , a free open-source environment for KDD and machine learning, was employed. ...
doi:10.7305/automatika.54-4.411
fatcat:j5pytvbnibannd4pb43simpwcu
Interactive Web-Based Visualization of Multidimensional Physical and Astronomical Data
2021
Frontiers in Big Data
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The implementation of interactive web-based visualizations enables quick and convenient reanalysis and comparisons of phenomenological data. ...
In this article, we propose expanding the use of scientific repositories such as Zenodo and HEP data, in particular, to better study multiparametric solutions of physical models. ...
The SPOT framework provides classes for datasets, data views, partitions, aggregation, and filtering. ...
doi:10.3389/fdata.2021.626998
pmid:34250466
pmcid:PMC8264300
fatcat:f3il3fknpzc7vpy64lvtwyw6h4
Interactive web-based visualization of multi-dimensional physical and astronomical data
[article]
2020
arXiv
pre-print
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The implementation of interactive web-based visualizations enables fast and comfortable re-analysis and comparisons of phenomenological data. ...
In this manuscript, we propose to expand the use of scientific repositories such as Zenodo and HEP Data, in particular in order to better examine multi-parametric solutions of physical models. ...
A demonstration of interactive visualization phenoMLdata is an online interactive plotting interface to a database of publicly available data sets, based on the open-source SPOT framework. ...
arXiv:2011.03801v1
fatcat:dfprjomf2zesbpoxc2j4f5nw5a
FISH-quant v2: a scalable and modular analysis tool for smFISH image analysis
[article]
2021
biorxiv/medrxiv
pre-print
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Recent progress in experimental techniques provides larger data-sets, requiring adequate tools for data analysis and exploration. ...
Our package allows the user to detect isolated and clustered mRNA spots, segment nuclei and cells, quantify RNA localization patterns and visualize these results at the single-cell level. ...
FISH-quant v2 enjoys a better integration to other open source tools and frameworks, from data analysis to web-based user interaction. ...
doi:10.1101/2021.07.20.453024
fatcat:wttfbqs3qvembbu4i6h3my3lyq
Cloud-Native Repositories for Big Scientific Data
2021
Computing in science & engineering (Print)
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The Pangeo Project has developed a prototype implementation of these principles by using open-source scientific Python tools. ...
These objectives motivate a set of best practices for cloud-native data repositories: analysis-ready data, cloudoptimized (ARCO) formats, and loose coupling with data-proximate computing. ...
Cloud-based science platforms built on open architecture require many elements: software for interactive data analysis, machine learning, and visualization; elastically scaled computing resources; and ...
doi:10.1109/mcse.2021.3059437
fatcat:gbyixgevmzbgfathdbcx4vsvvq
Hitting the sweet spot of complexity: Reasons why the development of new custom-tailored models is still warranted and should be encouraged in aquatic sciences
2021
Journal of Limnology
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This is true for both laboratory experiments and those carried out outdoors, under semi-controlled conditions. ...
processes and inform policy and decision making in environmental management. ...
of global data and code repositories, libraries of models, equations and parameter values, wider adoption of ensemble modelling approaches, etc. ...
doi:10.4081/jlimnol.2021.2035
fatcat:a5df262ecjdv5bivfjlns5kqpm
Seagrass excretes sugars to their rhizosphere making them the sweet spots in the sea
[article]
2019
bioRxiv
pre-print
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Despite the growing attention to the link between plant production, microbial communities, and the carbon cycle in terrestrial ecosystems, these processes remain enigmatic in the sea. ...
Despite covering less than 0.1 % of coastal regions, they have the capacity to bury up to 10 % of marine organic matter and can bury the same amount of carbon 35 times faster than tropical rainforests. ...
Acknowledgements We thank Tora Gulstad, Kristopher Caspersen, Marvin Weinhold, Frantisek Fojt, Janine Beckmann, Silke Wetzel, and Miriam Sadowski (Max Planck Institute for Marine Microbiology-certified ...
doi:10.1101/797522
fatcat:loeil25ambevjl4wzlvm7inw3y
Insights into the origin and distribution of biodiversity in the Brazilian Atlantic forest hot spot: a statistical phylogeographic study using a low-dispersal organism
2014
Heredity
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We conclude that extant SAF biodiversity originated and has been shaped by complex interactions between ancient geological events and more recent evolutionary processes, whereas Pleistocene climate changes ...
The relative importance of the processes that generate and maintain biodiversity is a major and controversial topic in evolutionary biology with large implications for conservation management. ...
We conducted two different analyses (combining COI and ITS-1 data) in the ABC framework. ...
doi:10.1038/hdy.2014.3
pmid:24549112
pmcid:PMC4023448
fatcat:r2kstpvqojav7hyposr2betr4i
Grant Proposal: "Phinch: An interactive, exploratory data visualization framework for environmental -Omics datasets"
2017
Figshare
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Sloan Foundation, focused on the Phinch data visualization framework - http://phinch.org ...
illustrating the Phinch visualization toolkit, and c) external software development that has incorporated Phinch's open source code and data visualizations. ...
Finally, we aim to build a community of open source contributors to the Phinch framework, by specifically engaging with the Center for Open Science (https://cos.io/) and the Mozilla Science Lab's "Working ...
doi:10.6084/m9.figshare.5471809.v1
fatcat:ibts53tfcbcwjlxtxhup3kli4i
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