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openBEB: open biological experiment browser for correlative measurements
2014
BMC Bioinformatics
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Results: We have developed openBEB (open Biological Experiment Browser), a software framework for data acquisition, coordination, annotation and synchronization with database solutions such as openBIS. ...
The open architecture of openBEB enables the fast integration of plug-ins, e.g., for data acquisition or visualization. ...
Acknowledgements We thank Stefan Arnold, Christoph von Arx, Benjamin Bircher, Dominic Giss, Simon Kemmerling (C-CINA, University Basel) for testing the openBEB software. ...
doi:10.1186/1471-2105-15-84
pmid:24666611
pmcid:PMC3987129
fatcat:33lyusgpjncuddbrqipz2u5ugm
Intuitive Web-Based Experimental Design for High-Throughput Biomedical Data
2015
BioMed Research International
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for failure analysis or further experiments in the future. ...
Data files created after measurement of the samples can be uploaded to a datastore, where they are automatically linked to the previously created experimental design model. ...
Acknowledgment The authors acknowledge the support by Deutsche Forschungsgemeinschaft and Open Access Publishing Fund of University of Tübingen. ...
doi:10.1155/2015/958302
pmid:25954760
pmcid:PMC4411450
fatcat:5zbftqlxuvfrff5bh7hhi37u5i
Single-cell lysis for visual analysis by electron microscopy
2013
Journal of Structural Biology
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The stochastic nature of biological systems makes the study of individual cells a necessity in systems biology. ...
Transmission electron microscopy (TEM) allows for the analysis of proteins at the single-molecule level. ...
Acknowledgments We thank Andreas Engel for his inspiring ideas and support, the workshop of the Biozentrum of the University Basel for their aid and Shirley Müller for carefully reading the manuscript ...
doi:10.1016/j.jsb.2013.06.012
pmid:23816812
fatcat:6xuetkdjuvekphw4otpktczstm
Single-cell lysis for visual analysis by electron microscopy
2013
Preserved Fulltext
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The file type is application/pdf.
The stochastic nature of biological systems makes the study of individual cells a necessity in systems biology. ...
Journal of Structural Biology, 183(3):467-73. a b s t r a c t The stochastic nature of biological systems makes the study of individual cells a necessity in systems biology. ...
Acknowledgments We thank Andreas Engel for his inspiring ideas and support, the workshop of the Biozentrum of the University Basel for their aid and Shirley Müller for carefully reading the manuscript ...
doi:10.5167/uzh-80940
fatcat:tlavzlcj45eohm36jw3y4otpia