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openBEB: open biological experiment browser for correlative measurements

Chandrasekhar Ramakrishnan, Andrej Bieri, Nora Sauter, Sophie Roizard, Philippe Ringler, Shirley A Müller, Kenneth N Goldie, Kaloyan Enimanev, Henning Stahlberg, Bernd Rinn, Thomas Braun
2014 BMC Bioinformatics  
Results: We have developed openBEB (open Biological Experiment Browser), a software framework for data acquisition, coordination, annotation and synchronization with database solutions such as openBIS.  ...  The open architecture of openBEB enables the fast integration of plug-ins, e.g., for data acquisition or visualization.  ...  Acknowledgements We thank Stefan Arnold, Christoph von Arx, Benjamin Bircher, Dominic Giss, Simon Kemmerling (C-CINA, University Basel) for testing the openBEB software.  ... 
doi:10.1186/1471-2105-15-84 pmid:24666611 pmcid:PMC3987129 fatcat:33lyusgpjncuddbrqipz2u5ugm

Intuitive Web-Based Experimental Design for High-Throughput Biomedical Data

Andreas Friedrich, Erhan Kenar, Oliver Kohlbacher, Sven Nahnsen
2015 BioMed Research International  
for failure analysis or further experiments in the future.  ...  Data files created after measurement of the samples can be uploaded to a datastore, where they are automatically linked to the previously created experimental design model.  ...  Acknowledgment The authors acknowledge the support by Deutsche Forschungsgemeinschaft and Open Access Publishing Fund of University of Tübingen.  ... 
doi:10.1155/2015/958302 pmid:25954760 pmcid:PMC4411450 fatcat:5zbftqlxuvfrff5bh7hhi37u5i

Single-cell lysis for visual analysis by electron microscopy

Simon Kemmerling, Stefan A. Arnold, Benjamin A. Bircher, Nora Sauter, Carlos Escobedo, Gregor Dernick, Andreas Hierlemann, Henning Stahlberg, Thomas Braun
2013 Journal of Structural Biology  
The stochastic nature of biological systems makes the study of individual cells a necessity in systems biology.  ...  Transmission electron microscopy (TEM) allows for the analysis of proteins at the single-molecule level.  ...  Acknowledgments We thank Andreas Engel for his inspiring ideas and support, the workshop of the Biozentrum of the University Basel for their aid and Shirley Müller for carefully reading the manuscript  ... 
doi:10.1016/j.jsb.2013.06.012 pmid:23816812 fatcat:6xuetkdjuvekphw4otpktczstm

Single-cell lysis for visual analysis by electron microscopy

Simon Kemmerling, Stefan A Arnold, Benjamin A Bircher, Nora Sauter, Carlos Escobedo, Gregor Dernick, Andreas Hierlemann, Henning Stahlberg, Thomas Braun
2013
The stochastic nature of biological systems makes the study of individual cells a necessity in systems biology.  ...  Journal of Structural Biology, 183(3):467-73. a b s t r a c t The stochastic nature of biological systems makes the study of individual cells a necessity in systems biology.  ...  Acknowledgments We thank Andreas Engel for his inspiring ideas and support, the workshop of the Biozentrum of the University Basel for their aid and Shirley Müller for carefully reading the manuscript  ... 
doi:10.5167/uzh-80940 fatcat:tlavzlcj45eohm36jw3y4otpia