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omiXcore: a web server for prediction of protein interactions with large RNA
2017
Bioinformatics
Preserved Fulltext
Here we introduce omiXcore, a server for calculations of protein binding to large RNAs (> 500 nucleotides). ...
Our webserver allows (i) use of both protein and RNA sequences without size restriction, (ii) pre-compiled library for exploration of human long intergenic RNAs interactions and (iii) prediction of binding ...
Acknowledgement We would like to thank Fernando Cid for stimulating discussions. ...
doi:10.1093/bioinformatics/btx361
pmid:28637296
pmcid:PMC5870566
fatcat:drqnf7nfmbdchjweepm6zxk6tq
Structural analysis of SARS-CoV-2 and prediction of the human interactome
[article]
2020
bioRxiv
pre-print
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2020; you can also visit the original URL.
The file type is application/pdf.
We propose these proteins, also implicated in HIV replication, to be further investigated for a better understanding of host-virus interaction mechanisms. ...
Using the catRAPID method, we computed 3500 protein interactions with the 5 prime end and identified Cyclin T1 CCNT1, ATP-dependent RNA helicase DDX1, Zinc Finger Protein ZNF175 and other 20 high-confidence ...
Armaos, A., Cirillo, D. & Gaetano Tartaglia, G. omiXcore: a web server for prediction of 775 protein interactions with large RNA. Bioinformatics (2017) doi:10.1093/bioinformatics/btx361. 776 52. ...
doi:10.1101/2020.03.28.013789
fatcat:d3y5i4gianbf3ewlacsfhpmezq