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minerva and minepy: a C engine for the MINE suite and its R, Python and MATLAB wrappers

Davide Albanese, Michele Filosi, Roberto Visintainer, Samantha Riccadonna, Giuseppe Jurman, Cesare Furlanello
2012 Computer applications in the biosciences : CABIOS  
We provide the libraries minerva (with the R interface) and minepy for Python, MATLAB, Octave and C++.  ...  for the R package minerva.  ...  Inspired by these considerations, we propose an ANSI C implementation of the MINE algorithms, and the interfaces for R (minerva), and for Cþþ, Python and MATLAB/Octave (minepy).  ... 
doi:10.1093/bioinformatics/bts707 pmid:23242262 fatcat:jrca6b6osfgglo56c7t5y5bhvu

DTW-MIC Coexpression Networks from Time-Course Data [article]

Samantha Riccadonna and Giuseppe Jurman and Roberto Visintainer and Michele Filosi and Cesare Furlanello
2014 arXiv   pre-print
However, its reliability is limited since it cannot capture non-linear interactions and time shifts.  ...  of signals (MIC) and a measure identifying horizontal displacements (DTW).  ...  Albanese D, Filosi M, Visintainer R, Riccadonna S, Jurman G, et al. (2013) minerva and minepy: a C engine for the MINE suite and its R, Python and MATLAB wrappers. Bioinformatics 29: 407-408. 23.  ... 
arXiv:1210.3149v2 fatcat:m2hurjqkqrgmzfirqqlh6lvf7a

Cold Induced Antisense Transcription of FLOWERING LOCUS C in Distant Grasses

Fuchao Jiao, Kanchan Pahwa, Murray Manning, Niklas Dochy, Koen Geuten
2019 Frontiers in Plant Science  
Across B. distachyon accessions, the sequences of BdCOOLAIR1 and BdCOOLAIR2 are less conserved than exons but more conserved than flanking regions, suggesting a function for the transcript itself.  ...  Functional conservation of RNAs between different species is a key argument for their importance.  ...  Minerva and minepy: a C engine for the MINE suite and its R, Python and MATLAB wrappers.  ... 
doi:10.3389/fpls.2019.00072 pmid:30774642 pmcid:PMC6367677 fatcat:r2x77snyzjc2phlykp37sku3yq

The dynamics of the abundance of commercial fish in the Far Eastern seas and adjacent areas of the open part of the Pacific Ocean and factors influencing it
Динамика обилия массовых промысловых рыб дальневосточных морей и прилегающих районов открытой части Тихого океана и влияющие на неё факторы

Datsky Andrey V., Russian Federal Research Institute of Fisheries and Oceanography («VNIRO»), Kulik Vladimir V., Datskaya Sofia A., Pacific branch of VNIRO («TINRO»), Lomonosov Moscow State University («MSU»)
2021 Trudy VNIRO  
FMS analyst — ​c omputer program for the MINE suite and its R, Python and MATLAB wrappers // processing data from Russian Fishery Monitoring System. Bioinformatics.  ...  the MINE suite and its R, Python and MATLAB wrappers // North Pacific Fishery Management Council. Anchorage, AK. Bioin-formatics. V. 29, Is. 3.  ... 
doi:10.36038/2307-3497-2021-186-31-77 fatcat:j5hpmukywbb27mg3b2w5vrccly