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miRiadne: a web tool for consistent integration of miRNA nomenclature

Raoul J. P. Bonnal, Riccardo L. Rossi, Donatella Carpi, Valeria Ranzani, Sergio Abrignani, Massimiliano Pagani
2015 Nucleic Acids Research  
In this paper we introduce miRiadne, a web tool to harmonize miRNA nomenclature, which takes into account the original miR-Base versions from 10 up to 21, and annotations of 40 common profiling platforms  ...  The miRBase is the official miRNA repository which keeps the annotation updated on newly discovered miRNAs: it is also used as a reference for the design of miRNA profiling platforms.  ...  ACKNOWLEDGEMENT We wish to thank members of the INGM labs who internally used the miRiadne prototype application in their miRNA research helping us to debug it and to improve its features.  ... 
doi:10.1093/nar/gkv381 pmid:25897123 pmcid:PMC4489305 fatcat:k4xgqo66wrd4japyjfsduwxejq

miRBaseConverter: An R/Bioconductor Package for Converting and Retrieving miRNA Name, Accession, Sequence and Family Information in Different Versions of miRBase [article]

Taosheng Xu, Ning Su, Lin Liu, Junpeng Zhang, Hongqiang Wang, Weijia Zhang, Jie Gui, Kui Yu, Jiuyong Li, Thuc Duy Le
2018 biorxiv/medrxiv   pre-print
Results: We introduce miRBaseConverter, an R package integrating the latest miRBase version 22 available in Bioconductor to provide a suite of functions for converting and retrieving miRNA name (ID), accession  ...  information about miRNAs in miRBase and users will need to use a number of different tools in their analyses.  ...  Martin Morgan, the Bioconductor Project leader, for his valuable comments on the codes to greatly improve the retrieval efficiency of the miRBaseConverter package. Funding  ... 
doi:10.1101/407148 fatcat:hbbv4kivpjccrhjps5vid4a54i

miRBaseConverter: an R/Bioconductor package for converting and retrieving miRNA name, accession, sequence and family information in different versions of miRBase

Taosheng Xu, Ning Su, Lin Liu, Junpeng Zhang, Hongqiang Wang, Weijia Zhang, Jie Gui, Kui Yu, Jiuyong Li, Thuc Duy Le
2018 BMC Bioinformatics  
Results: We introduce miRBaseConverter, an R package integrating the latest miRBase version 22 available in Bioconductor to provide a suite of functions for converting and retrieving miRNA name (ID), accession  ...  information about miRNAs in miRBase and users will need to use a number of different tools in their analyses.  ...  Martin Morgan, the Bioconductor Project leader, for his valuable comments on the codes to greatly improve the retrieval efficiency of the miRBaseConverter package. Funding  ... 
doi:10.1186/s12859-018-2531-5 fatcat:lzkvvmzxu5ai7lwpvjifwfjeym