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The metaMicrobesOnline database (freely available at http://meta.MicrobesOnline.org) offers phylogenetic analysis of genes from microbial genomes and metagenomes. ... Such gene trees allow for rapid homologue analysis and subfamily comparison of genes from multiple metagenomes and comparisons with genes from microbial isolates. ... CONCLUSIONS Phylogenomic approaches to analysis of microbial communities that incorporate information from sequenced isolates and metagenomes permit both higher resolution functional comparisons between ...doi:10.1093/nar/gks1202 pmid:23203984 pmcid:PMC3531168 fatcat:ic52ha4lyjgpfamopzdbn4qoza