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Motivation: Copy number variations (CNVs) are gains and losses of DNA segments and have been associated with disease. Many large-scale genetic association studies are performing CNV analysis using whole exome sequencing (WES) and whole genome sequencing (WGS). In many of these studies, previous SNP-array data are available. An integrated cross-platform analysis is ex-pected to improve resolution and accuracy, yet there is no tool for effectively combining data from sequencing and arraydoi:10.1101/172700 fatcat:i3o6xabntje6dprmvzb6eurgpm