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iScore: an MPI supported software for ranking protein-protein docking models based on a random walk graph kernel and support vector machines
[article]
2019
bioRxiv
pre-print
Preserved Fulltext
vector machine approach with random-walk graph kernels to classify and rank protein-protein interfaces. ...
We recently published iScore, a novel graph kernel based scoring function. iScore ranks docking models based on their interface graph similarities to the training interface graph set. iScore uses a support ...
As a whole, the software provides 296 a user friendly solution for ranking PPIs more efficiently and accurately. 290
on a support vector machine classification using random-walk graph kernels
291 ...
doi:10.1101/788166
fatcat:c5l7fiivp5debfp4xnznznkygy
iScore: An MPI supported software for ranking protein–protein docking models based on a random walk graph kernel and support vector machines
2020
SoftwareX
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2020; you can also visit the original URL.
The file type is application/pdf.
vector machine approach with random-walk graph kernels to classify and rank protein-protein interfaces. ...
We recently published iScore, a novel graph kernel based scoring function. iScore ranks docking models based on their interface graph similarities to the training interface graph set. iScore uses a support ...
LX acknowledges financial support from the Netherlands Organisation for Scientific Research (Veni grant 722.014.005) and from an Accelerating Scientific Discovery (ASDI) grant from the Netherlands eScience ...
doi:10.1016/j.softx.2020.100462
pmid:35419466
pmcid:PMC9005067
fatcat:qbxbq627wjdilf4vzhdza3auuy
iScore: A novel graph kernel-based function for scoring protein-protein docking models
2019
Bioinformatics
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2020; you can also visit the original URL.
The file type is application/pdf.
set generated by a wide variety of docking approaches (i.e. docking software-non-specific). iScore ranks among the top scoring approaches on the CAPRI score set (13 targets) when compared with the 37 ...
Here we present iScore, a novel approach to scoring docked conformations that combines HADDOCK energy terms with a score obtained using a graph representation of the protein-protein interfaces and a measure ...
Discussion We have developed a novel graph-kernel based scoring function, iScore, for scoring and ranking docking models of protein-protein complexes. ...
doi:10.1093/bioinformatics/btz496
pmid:31199455
pmcid:PMC6956772
fatcat:jejx6kx7xjanhpoakh5sunmsi4