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iPath3.0: interactive pathways explorer v3

Youssef Darzi, Ivica Letunic, Peer Bork, Takuji Yamada
2018 Nucleic Acids Research  
iPath3.0 (http://pathways.embl.de) is a webapplication for the visualization and analysis of cellular pathways. It is freely available and open to everyone.  ...  Users can fully customize these networks and interactively explore them through its redesigned, fast and lightweight interface, which highlights general metabolic trends in multi-omics data.  ...  USER INTERFACE AND PATHWAY CUSTOMIZATION iPath3.0's pathway explorer provides zooming and panning controls that allow the user to easily navigate the complex pathway maps.  ... 
doi:10.1093/nar/gky299 pmid:29718427 pmcid:PMC6031023 fatcat:7kp4qsxcgraexorfdh26j7gdj4

Sixty-One Volatiles Have Phylogenetic Signals Across Bacterial Domain and Fungal Kingdom

Moamen M. Elmassry, Mohamed A. Farag, Robert Preissner, Björn-Oliver Gohlke, Birgit Piechulla, Marie C. Lemfack
2020 Frontiers in Microbiology  
Microorganisms are diverse in their genome sequences and subsequently in their encoded metabolic pathways, which enabled them to adapt to numerous environmental conditions.  ...  The performed approaches serve as a starting point to investigate less explored volatiles with potential roles in signaling, antimicrobial therapy, or diagnostics.  ...  Maps were visualized by iPath3.0: interactive pathways explorer v3.  ... 
doi:10.3389/fmicb.2020.557253 pmid:33101231 pmcid:PMC7554305 fatcat:q7ldahdnr5gtjmkjcgifnnzrzu

The role of strigolactones in P deficiency induced transcriptional changes in tomato roots

Yanting Wang, Hernando G. Suárez Duran, Jan C. van Haarst, Elio G.W.M Schijlen, Carolien Ruyter-Spira, Marnix H. Medema, Lemeng Dong, Harro J. Bouwmeester
2021 BMC Plant Biology  
Other biosynthesis pathways are also reprogrammed under P starvation, such as phenylpropanoid and carotenoid biosynthesis, pantothenate and CoA, lysine and alkaloids, and this also partially depends on  ...  Additionally, some plant hormone biosynthetic pathways were affected by P starvation and also here, SLs are required for many of the changes (more than two thirds for Gibberellins and around one third  ...  For the visualization of KEGG pathways, Interactive Pathways Explorer v3 (iPath3.0) was used [91] . in the roots of WT tomato and CCD8 RNAi line under different P starvation treatment times.  ... 
doi:10.1186/s12870-021-03124-0 fatcat:df3j7cs3jvha5hztxs33emba6i