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Git can facilitate greater reproducibility and increased transparency in science
2013
Source Code for Biology and Medicine
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In this paper I provide an overview of Git along with use-cases that highlight how this tool can be leveraged to make science more reproducible and transparent, foster new collaborations, and support novel ...
Despite this increase in transparency, it is still difficult to reproduce or build upon the findings of most scientific publications without access to a more complete workflow. ...
an increasing burden to be more transparent in order to maintain their credibility [6] . ...
doi:10.1186/1751-0473-8-7
pmid:23448176
pmcid:PMC3639880
fatcat:hkumjkt2urcllhqj6l5zhkmryy
Reproducibility in the Field: Transparency, Version Control and Collaboration on the Project Panormos Survey
2017
Open Archaeology
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This article shares our perspectives, choices and experiences of piloting a set of tools (namely: ODK, Git, GitLab CE and R) which can address reproducibility of fieldwork in the form of an intensive survey ...
But new digital technology now offers field practitioners a set of tools that can at least increase the transparency of the data-collection process as well as bring other benefits of an Open Science approach ...
In the spirit of archaeological collaboration, Anja Slawisch (DAI) and Ben Marwick (Washington) offered invaluable advice and suggestions to early drafts of this article, which considerably improved to ...
doi:10.1515/opar-2017-0019
fatcat:kezebiak6zawjbzm5ertoov42e
r-cubed: Guiding the overwhelmed scientist from random wrangling to Reproducible Research in R
2021
Journal of Open Source Education
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Along with the open science movement on the rise, methods and analytic processes are also increasingly expected to be open and transparent and for scientific studies to be reproducible (Watson, 2015) . ...
The computational learning module we have developed and described below aims to introduce and improve skills in R, reproducibility, and open science for researchers in the biomedical field, with a focus ...
., (2021) . r-cubed: Guiding the overwhelmed scientist from random wrangling to Reproducible Research in R. Journal of Open Source Education, 4(44), 122. https://doi.org/10.21105/jose.00122 ...
doi:10.21105/jose.00122
fatcat:c2rlbbxssbfx7gcs4crv7zsmzm
Moving forward: Transparency, Openness, and Reproducibility in Our Lab - Handout for Workshop Activity
2018
Figshare
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of transparency, openness, and reproducibility in science and what various stakeholders are doing to address this (available here: https://doi.org/10.6084/m9.figshare.4877480.v1). ...
The presentation was followed by a breakout session centered on the question: what can we, as a team, do to becomemore transparent, open, and reproducible? ...
Git can facilitate greater reproducibility and increased transparency in science. Source Code for Biology and Medicine, 8(1), 1-8. ...
doi:10.6084/m9.figshare.5822766.v1
fatcat:hcp5as5fzvbsrfasdff7hffaiq
Running an open experiment: transparency and reproducibility in soil and ecosystem science
2016
Environmental Research Letters
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Researchers in soil and ecosystem science, and almost every other field, are being pushed-by funders, journals, governments, and their peers-to increase transparency and reproducibility of their work. ...
Nonetheless, we encourage the communities in our respective fields to consider its advantages, and to lead rather than follow with respect to scientific reproducibility, transparency, and data availability ...
Acknowledgments This research was supported by the Office of Science of the US Department of Energy as part of the Terrestrial Ecosystem Sciences Program. ...
doi:10.1088/1748-9326/11/8/084004
fatcat:fbgepaurljgndijjmfu4xokewm
Our path to better science in less time using open data science tools
2017
Nature Ecology & Evolution
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See http://ohiscience.org/betterscienceinlesstime as an example of a website built with RMarkdown and the RStudio-GitHub workflow, and for links and resources referenced in the paper. ...
Pacheco and L. Mosher who are our partners at Conservation International. We thank all past contributors and funders that have supported the Ocean Health Index, including B. Wrigley and H. ...
Now, with available tools, the benefits of openness can be a byproduct of time saving efficiencies, because tools that reduce data headaches also result in science that is more transparent, reproducible ...
doi:10.1038/s41559-017-0160
pmid:28812630
fatcat:p4fyln5njnbj5olpyjlcvqyl5u
Striving for transparent and credible research: practical guidelines for behavioral ecologists
2017
Behavioral Ecology
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Finally, we suggest that all journals in our field, such as Behavioral Ecology, give additional weight to transparent studies and therefore provide greater incentives to align our scientific practices ...
same finding (lack of reproducibility), will result in a low probability of independent studies reaching the same outcome (lack of replicability). ...
The authors thank all speakers and attendees of the post ISBE 2016 conference symposium "Challenge for our generation: Open, reproducible, and reliable science," as well as Wolfgang Forstmeier, Shinichi ...
doi:10.1093/beheco/arx003
pmid:29622916
pmcid:PMC5873838
fatcat:j5fk27qu5zf3lnwiw5qmrquzcy
WORCS: A workflow for open reproducible code in science
2021
Data Science
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This paper introduces the Workflow for Open Reproducible Code in Science (WORCS): A step-by-step procedure that researchers can follow to make a research project open and reproducible. ...
Adopting open science principles can be challenging, requiring conceptual education and training in the use of new tools. ...
We acknowledge Jeroen Ooms for offering feedback and suggesting the use of the R package gert. ...
doi:10.3233/ds-210031
fatcat:buhljyyembakdobcdrlleoj5ie
Administrative social science data: The challenge of reproducible research
2016
Big Data & Society
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We would also like to thank Professor Chris Dibben (University of Edinburgh) and colleagues at the Administrative Data Research Centre -Scotland. ...
Professor Philip Stark (UC Berkeley), Kellie Ottoboni (UC Berkeley), Dr Nicole Janz (University of Cambridge), Dr Alasdair Rutherford (University of Stirling), Dr Iain Atherton (Edinburgh Napier University), and ...
Sharing can be automated within the Git environment through global repositories such as GitHub and BitBucket and this enhances transparency, maintainability, and ultimately reproducibility. ...
doi:10.1177/2053951716684143
fatcat:rwducs6vhrgwlhbz7bsmj6acgu
GESIS Open Science Strategy
2020
EUROLAB annual report
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Open Methodology in the Social Sciences Open Methodology refers to the transparent documentation of data collection, processing and analysis, and means of reproducing these steps. ...
Only once data and methodology are open, can results be reproduced. Additionally, Open Data can be re-used and help to address new research questions. ...
doi:10.21241/ssoar.68697
fatcat:ve7hka7mmnasjbxtjymyt3ntky
Seven Reasons Why: A User's Guide to Transparency and Reproducibility
2019
Brazilian Political Science Review
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Despite a widespread agreement on the importance of transparency in science, a growing body of evidence suggests that both the natural and the social sciences are facing a reproducibility crisis. ...
In addition, we review the most recent computational tools to work reproducibly. With this paper, we hope to foster transparency within the political science scholarly community. ...
) Council approved the changes to the Ethics Guide to facilitate data access and increase research transparency (LUPIA and ELMAN, 2014). ...
doi:10.1590/1981-3821201900020001
fatcat:v7i46mzolvhy3h3dzltit5lnai
The Tao of open science for ecology
2015
Ecosphere
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We present an overview of tools and best practices that can enable these shifts in mindset at each stage of the research process, including tools to support data management planning and reproducible analyses ...
The concept of transparency at all stages of the research process, coupled with free and open access to data, code, and papers, constitutes "open science." ...
Both data sources show an increase in the number of publications about open science, and an increase in annual citations of those papers. ...
doi:10.1890/es14-00402.1
fatcat:hoitnkpzczhl5nj2l3bqqhrr3u
Reproducible Research in R: A Tutorial on How to Do the Same Thing More Than Once
2021
Psych
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It is a building block for transparent and cumulative science because it enables the originator and other researchers, on other computers and later in time, to reproduce and thus understand how results ...
In this tutorial, we demonstrate how the R package repro supports researchers in creating fully computationally reproducible research projects with tools from the software engineering community. ...
We are grateful to Julia Delius for her helpful assistance in language and style editing. ...
doi:10.3390/psych3040053
fatcat:2rwhjoeksnerteyw4vbaktc5y4
Enabling Reproducibility for Small and Large Scale Research Data Sets
2017
D-Lib Magazine
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Git can facilitate greater reproducibility and increased transparency in science. Source code for biology and medicine 8.1 (2013): 1. ...
Git [11]. ...
doi:10.1045/january2017-proell
fatcat:vhtxuslylndqrjotvla4lkjh5m
The importance of open science for biological assessment of aquatic environments
2020
PeerJ
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At the core of this philosophy is the concept that research should be reproducible and transparent, in addition to having long-term value through effective data preservation and sharing. ...
In this article, we review core open science concepts that have recently been adopted in the ecological sciences and emphasize how adoption can benefit the field of bioassessment for both prescriptive ...
ADDITIONAL INFORMATION AND DECLARATIONS Funding The authors received no funding for this work.
Competing Interests The authors declare there are no competing interests. ...
doi:10.7717/peerj.9539
pmid:32742805
pmcid:PMC7377246
fatcat:ewzf3zevifgx5hyqseb6zvponq
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