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Filters
gFACs: Filtering, analysis, and conversion to unify genome annotations across alignment and gene prediction frameworks
[article]
2018
bioRxiv
pre-print
Preserved Fulltext
Summary: To provide oversight to the increasing number of published genome annotations, we present gFACs as a software package to filter, analyze, and convert predicted gene models and alignments. gFACs ...
operates across a wide range of alignment, analysis, and gene prediction software inputs with a flexible framework for defining gene models with reliable structural and functional attributes. gFACs supports ...
We also thank the members of the Plant Computational Genomics lab at the University of Connecticut: Sumaira Zaman, Nasim Rahmatpour, Taylor Falk, and Alex Trouern-Trend for the input on the software. ...
doi:10.1101/402396
fatcat:7has5qdxxrbf3eeimfyrswmmrm
gFACs: Gene Filtering, Analysis, and Conversion to Unify Genome Annotations Across Alignment and Gene Prediction Frameworks
2019
Genomics, Proteomics & Bioinformatics
Preserved Fulltext
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To provide oversight to the increasing number of published genome annotations, we present a software package, the Gene Filtering, Analysis, and Conversion (gFACs), to filter, analyze, and convert predicted ...
The software operates across a wide range of alignment, analysis, and gene prediction files with a flexible framework for defining gene models with reliable structural and functional attributes. gFACs ...
Acknowledgments
Supplementary material Supplementary data to this article can be found online at https://doi.org/10.1016/j.gpb.2019.04.002. ...
doi:10.1016/j.gpb.2019.04.002
pmid:31437583
pmcid:PMC6818179
fatcat:5dxv64sepnhovdiamdss6ve6gq
De novo genome assembly of the marine teleost, Bluefin Trevally (Caranx melampygus)
2021
G3: Genes, Genomes, Genetics
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A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2021; you can also visit the original URL.
The file type is application/pdf.
The assembly was annotated with 33.1K protein-coding genes, 71.4% of which were assigned putative functions, using RNA-seq data from eight tissues from the same individual. ...
Most research to-date has been performed in Hawai'i, raising questions about the status of bluefin trevally populations across its Indo-Pacific range. ...
., and J. Wegrzyn, 2019 gFACs: Gene Filtering, Analysis, and Conversion to Unify 381 Genome Annotations Across Alignment and Gene Prediction Frameworks. ...
doi:10.1093/g3journal/jkab229
pmid:34568914
pmcid:PMC8473972
fatcat:jluqqph5sjcjbn76dkficqkp7m