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eALPS: Estimating Abundance Levels in Pooled Sequencing Using Available Genotyping Data
2013
Journal of Computational Biology
Here, we propose a method (eALPS) that uses the genotype data in conjunction with the pooled sequence data in order to accurately estimate the proportions of the samples in the pool, even in cases where ...
not all individuals in the pool were genotyped (eALPS-LD). ...
The genotype data was also generated as part of (NIH) grant number 1R01CA154643-01A1. ...
doi:10.1089/cmb.2013.0105
pmid:24144111
pmcid:PMC4013753
fatcat:as2om222uvbalntok3h6gtugny
eALPS: Estimating Abundance Levels in Pooled Sequencing Using Available Genotyping Data
[chapter]
2013
Lecture Notes in Computer Science
Here, we propose a method (eALPS) that uses the genotype data in conjunction with the pooled sequence data in order to accurately estimate the proportions of the samples in the pool, even in cases where ...
not all individuals in the pool were genotyped (eALPS-LD). ...
The genotype data was also generated as part of (NIH) grant number 1R01CA154643-01A1. ...
doi:10.1007/978-3-642-37195-0_4
fatcat:l6qwugtvbrfklgipckhiu2i23e
Early Alpine human occupation backdates westward human migration in Late Glacial Europe
[article]
2020
biorxiv/medrxiv
pre-print
In Southern Europe, Early Epigravettian material culture was replaced by Late Epigravettian art and technology about 18-17 ka ago at the beginning of southern Alpine deglaciation, although available genetic ...
Here we generate new genomic data from a human mandible uncovered at the Late Epigravettian site of Riparo Tagliente (Veneto, Italy), that we directly dated to 16,980-16,510 cal BP (2σ). ...
sequence RSRS and the parameter-rsrs were given to estimate the haplogroups using Haplogrep2. ...
doi:10.1101/2020.08.10.241430
fatcat:mvk76pazbvhjnio5afz3ihic7e