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bammds: a tool for assessing the ancestry of low-depth whole-genome data using multidimensional scaling (MDS)
2014
Computer applications in the biosciences : CABIOS
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Our tool is aimed at determining the ancestry of unknown samples-typical of ancient DNA data-particularly when only low amounts of data are available for those samples. ...
We present bammds, a practical tool that allows visualization of samples sequenced by second-generation sequencing when compared with a reference panel of individuals (usually genotypes) using a multidimensional ...
Allentoft, Hannes Schroeder, Kerttu Majander, Maanasa Raghavan and Johannes Krause for helpful discussions and testing, and the National high-throughput DNA Sequencing Center for assistance with the sequencing ...
doi:10.1093/bioinformatics/btu410
pmid:24974206
pmcid:PMC4184259
fatcat:yjyplz4mcba3batzpjwfyanpma
The genomic history of the Aegean palatial civilizations
2021
Cell
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A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2021; you can also visit the original URL.
The file type is application/pdf.
We sequenced six Early to Middle BA whole genomes, along with 11 mitochondrial genomes, sampled from the three BA cultures of the Aegean Sea. ...
EBA Aegeans were shaped by relatively small-scale migration from East of the Aegean, as evidenced by the Caucasus-related ancestry also detected in Anatolians. ...
., and Nielsen, R. (2014). bammds: a tool for assessing the ancestry of low-depth whole-genome data using multidimensional scaling (MDS). Bioinformatics 30, 2962-2964. ...
doi:10.1016/j.cell.2021.03.039
pmid:33930288
pmcid:PMC8127963
fatcat:cmodzhyw7zcgtjfgb2ktjolxm4