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bammds: a tool for assessing the ancestry of low-depth whole-genome data using multidimensional scaling (MDS)

Anna-Sapfo Malaspinas, Ole Tange, José Víctor Moreno-Mayar, Morten Rasmussen, Michael DeGiorgio, Yong Wang, Cristina E. Valdiosera, Gustavo Politis, Eske Willerslev, Rasmus Nielsen
2014 Computer applications in the biosciences : CABIOS  
Our tool is aimed at determining the ancestry of unknown samples-typical of ancient DNA data-particularly when only low amounts of data are available for those samples.  ...  We present bammds, a practical tool that allows visualization of samples sequenced by second-generation sequencing when compared with a reference panel of individuals (usually genotypes) using a multidimensional  ...  Allentoft, Hannes Schroeder, Kerttu Majander, Maanasa Raghavan and Johannes Krause for helpful discussions and testing, and the National high-throughput DNA Sequencing Center for assistance with the sequencing  ... 
doi:10.1093/bioinformatics/btu410 pmid:24974206 pmcid:PMC4184259 fatcat:yjyplz4mcba3batzpjwfyanpma

The genomic history of the Aegean palatial civilizations

Florian Clemente, Martina Unterländer, Olga Dolgova, Carlos Eduardo G. Amorim, Francisco Coroado-Santos, Samuel Neuenschwander, Elissavet Ganiatsou, Diana I. Cruz Dávalos, Lucas Anchieri, Frédéric Michaud, Laura Winkelbach, Jens Blöcher (+25 others)
2021 Cell  
We sequenced six Early to Middle BA whole genomes, along with 11 mitochondrial genomes, sampled from the three BA cultures of the Aegean Sea.  ...  EBA Aegeans were shaped by relatively small-scale migration from East of the Aegean, as evidenced by the Caucasus-related ancestry also detected in Anatolians.  ...  ., and Nielsen, R. (2014). bammds: a tool for assessing the ancestry of low-depth whole-genome data using multidimensional scaling (MDS). Bioinformatics 30, 2962-2964.  ... 
doi:10.1016/j.cell.2021.03.039 pmid:33930288 pmcid:PMC8127963 fatcat:cmodzhyw7zcgtjfgb2ktjolxm4