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Genotypic and Allelic Distribution of Polymorphic Variants of Gene SLC47A1 Leu125Phe (rs77474263) and Gly64Asp (rs77630697) and Their Association to the Clinical Response to Metformin in Adult Pakistani T2DM Patients

Sadaf Moeez, Madiha Khalid, Zoya Khalid, Sania Shaheen, Sumbul Khalid
2019 Zenodo  
, Zoya Khalid, Sania Shaheen, Sumbul Khalid B World Academy of Science, Engineering and Technology International Journal of Medical and Health Sciences Vol:13, No:6, 2019 294 International Scholarly  ...  Index, Medical and Health Sciences Vol:13, No:6, 2019 waset.org/Publication/10010491 and Their Association to the Clinical Response to Metformin in Adult Pakistani T2DM Patients Sadaf Moeez, Madiha Khalid  ... 
doi:10.5281/zenodo.3299557 fatcat:nni32rpbynhpjjminfbfxwzo5m

A Grammatical Sketch of Asur: A North Munda language

Zoya Khalid
2020 International Conference on Natural Language Processing  
In Asur A Grammatical Sketch of Asur: A North Munda language Zoya Khalid Central University of Jharkhand language 1 st person pronouns for Dual and Plural have two further categories-inclusive (including  ...  The sound /-ao/ is added to the borrowed verb root to form Asur verb root or infinitive verb in Asur (Khalid, 2020) .  ...  Nasalization sound is also often heard in onomatopoeic words like /cũ cũ/ "sound of rat", /kõ kõ/ "sound made by monkey" (Khalid, 2020) . Intra-syllabic consonant clusters are rarely seen in Asur.  ... 
dblp:conf/icon-nlp/Khalid20 fatcat:iba2k2m2vjfnlbjykwvz5sj4se

Determination of Knowledge of Caregivers about Dietary Practices of Autistic Children

Maryam Yaseen, Bahisht Rizwan, Iqra Gulzar, Ramsha Khalid, Sheza Tanveer, Zoya Abid, Sana Farooq
2020 BIOMEDICA  
and Objective: Autism belongs to a complex neurodevelopmental disorder. The lack of knowledge about dietary practices of autistic caregivers is perceived as the triggering factor of 'Autistic Spectrum Disorder (ASD). In this particular 'Knowledge, Attitude and Practice (KAP) Survey' the knowledge (K) of nutrition, attitude (A) of children towards such nutrition and dietary practices (P) among the caregivers of autistic children. The pre-testing and post-testing for knowledge has been observed.
more » ... he knowledge questionnaire was designed to facilitate the caregivers to determine their knowledge regarding the dietary patterns of autistic children. Methods: This quasi-experimental study comprised of 50 caregivers (particularly mothers, and fathers in a few instances) of autistic children enrolled at Amin Maktab Center for Special Education Lahore. The nutrition education program was developed and participants were enrolled. Analysis of the change in knowledge, attitude and practice of autistic caregivers through pre-testing and post-testing at a gap of four months was carried out using statistical tests. Results: The pre-testing and post-testing phase of the study revealed significant improvement in (a) basic knowledge about nutritional needs of autistic children (22% vs. 100%), (b) practicing patient-tailored special diet (34% vs. 92%) and (c) resolution of food allergies (62% vs. 16%) in autistic children. The most important benchmark in this regard was Body Mass Index (BMI) of children where deranged BMI improved significantly (p = 0.000) to normal BMI in pre-and post-testing phases. Conclusions: Lack of knowledge is higher among aforementioned caregivers of concerned autistic children. Adoption of nutrition education programs by anutistic caregivers helps in creating optimal knowledge, attitude and practices regarding nutritional needs of autistic children for effective targeted behavior and management.
doi:10.51441/biomedica/5-155 fatcat:et47wfg4czeuddrdtns6zye5o4

Mutational analysis on predicting the impact of high-risk SNPs in human secretary phospholipase A2 receptor (PLA2R1)

Zoya Khalid, Omar Almaghrabi
2020 Scientific Reports  
PLA2R1 is a transmembrane glycoprotein that acts as an endogenous ligand which stimulates the processes including cell proliferation and cell migration. The SNPs in PLA2R1 is associated with idiopathic membranous nephropathy which is an autoimmune kidney disorder. The present study aimed to explore the structure-function analysis of high risk SNPs in PLA2R1 by using 12 different computational tools. First the functional annotation of SNPs were carried out by sequence based tools which were
more » ... er subjected to evolutionary conservation analysis. Those SNPs which were predicted as deleterious in both categories were further considered for structure based analysis. The resultant SNPs were C1096S, C545S, C664S, F1257L, F734S, I1174T, I1114T, P177S, P384S, W1198G, W1328G, W692C, W692L, W962R, Y499H. One functional domain of PLA2R1 is already modelled in PDB (6JLI), the full 3D structure of the protein was predicted using I-TASSER homology modelling tool. The stability analysis, structure superimposition, RMSD calculation and docking studies were carried out. The structural analysis predicted four mutations F734S, F1246L, I1174T, W1198G as damaging to the structure of the protein. All these mutations are occurring at the conserved region of CTL domain hence are more likely to abolish the function of the protein. Up to the best of our knowledge, this is the first study that provides in-depth and in-silico analysis of deleterious mutations on structure and function of PLA2R1.
doi:10.1038/s41598-020-68696-7 pmid:32678193 fatcat:mcnquoqcejatvmu7u7xxht5uf4

In Silico Gene Expression Based Analysis on Claudin Family Members Association with Human Thyroid Cancer

Shaukat Iqbal Malik, Zoya Khalid, Sheema Sameen
2012 Journal of Proteomics & Bioinformatics  
doi:10.4172/jpb.1000201 fatcat:5scemq3ibbejpirshf6uqsw6h4

Computational Analysis on the Role of GPM6A in Human Thyroid Cancer

Zoya Khalid, Sheema Sameen, Shaukat I Malik, Shehzad S
2012 Journal of Data Mining in Genomics & Proteomics  
Thyroid cancer is one of the major cancers around the world. In this study the whole thyroid genome is systematically scanned in order to hit those molecular targets which are highly associated with thyroid cancer. To achieve this goal bioinformatics methodologies are combined. These include the high throughput microarray analysis combined with Serial analysis of gene expression. The results obtained revealed Glycoprotein M6A (GPM6A) as a novel associated gene marker. It belongs to the
more » ... ein's family which plays a major role in cell migration and also known as the major contributors in tumor formation. Moreover the biological pathway of GPM6A is not yet been defined. In this study by assessing the whole biological mechanism the pathway is also inferred .This new drug target will help the biologists in finding the early diagnosis and better treatment for the thyroid cancer patients. Journal of
doi:10.4172/2153-0602.1000114 fatcat:megyx2r4b5f2hjznimpsf6wpxi

Effects of Single-Nucleotide Polymorphisms in Calmodulin-Dependent Protein Kinase Kinase 2 (CAMKK2): A Comprehensive Study

Zoya Khalid, Omar Almaghrabi, Emil Alexov
2020 Computational and Mathematical Methods in Medicine  
Calmodulin-dependent protein kinase kinase 2 (CAMKK2) is a protein kinase that belongs to the serine/threonine kinase family. It phosphorylates kinases like CAMK1, CAMK2, and AMP, and this signaling cascade is involved in various biological processes including cell proliferation, apoptosis, and proliferation. Also, the CAMKK2 signaling activity is required for the healthy activity of the brain which otherwise can cause diseases like bipolar disorders and anxiety. The current study is based on
more » ... silico bioinformatics analysis that combines sequence- and structure-based predictions to mark a SNP as damaging or neutral. The combined results from sequence-based, evolutionary conservation-based, and consensus-based tools have predicted a total of 18 nsSNPs as deleterious, and these nsSNPs were further subjected to structure-based analysis. The six mutant models of V195A, V249M, R311C, F366Y, P389T, and W445C showed a higher deviation from the wildtype protein model and hence were further taken for docking studies. The molecular docking analysis has predicted that these mutations will also be disruptive to the protein-protein interactions between CAMKK2 and PRKAG1 which will create an evident reduction in the kinase activity. The current study has enlightened us that a few of the significant mutations are prime candidates in CAMKK2 which could be the fundamental cause of various bipolar and psychiatric disorders. This is the first detailed study that predicts the deleterious nsSNPs in CAMKK2 and contributes positively in providing a better understanding of disease mechanisms.
doi:10.1155/2020/7419512 pmid:33082841 pmcid:PMC7559224 fatcat:x7eoqpucx5fiznkzcuhpmrtgay

Association of musculoskeletal discomfort with the use of high heeled shoes in females

Wardah Hussain Malick, Hifsa Khalid, Zoya Mehmood, Hamid Hussain
2020 JOURNAL OF PAKISTAN MEDICAL ASSOCIATION  
Objective: To determine the association of musculoskeletal discomfort with the high heeled shoes related variables in females who use such footwear frequently. Methods: A cross sectional study was conducted on 174 female residents of Islamabad and Rawalpindi, for a time period stretching from July 1, 2018 to December 31, 2018. The participants aged between 18 and 55 years appeared as the frequent users of high heeled shoes. The Nordic Musculoskeletal Questionnaire (NMQ) and Numeric Pain Rating
more » ... cale (NPRS) were used as outcome measures to assess the musculoskeletal discomfort and a self-structured questionnaire was used to obtain information related to the high heeled shoes e.g. duration and frequency of high heeled shoe use. Data was analyzed using SPSS version 21. Results: The data analysis showed a positive association of shoulders' discomfort with length of high heeled shoes used by women (p value= 0.03<0.05). Moreover, a positive association was also found between an occurrence of upper back discomfort and length of the heeled shoes (p value= 0.01<0.05). However, no significant association was found between pain intensity and length of the shoe' heel, frequency and duration of high heeled shoe use. Conclusion: The shoulders' and upper back discomfort in females who frequently used high heeled shoes was determined to be associated with the length of the heels in shoes. Keywords: Female, Heel, Musculoskeletal System, Pain, Shoes. Continuous...
doi:10.47391/jpma.536 pmid:33475598 fatcat:hjv4s2a3cvdnta4ygaynq24guy

Frequency of Psychiatric Disorders in Suicide Attempters: A Cross-Sectional Study from Low-Income Country

Fnu Pooja, Payal Chhabria, Pardeep Kumar, Fnu Kalpana, Pardeep Kumar, Abbas Iqbal, Zoya Qamar, Dua Khalid, Amber Rizwan
2021 Cureus  
In Pakistan, due to legal and religious association, cases of attempted suicides are underreported in Pakistan, yet it is essential to have accurate data so that the causality leading to this national tragedy can be studied and minimized. Psychiatric disorders leading to suicide is largely neglected and under-researched in Pakistan. In this study, we aim to observe the frequency of psychiatric disorders among suicide attempters, which can help the doctors to counsel and treat the patients
more » ... and devise preventive strategies. In this cross-sectional survey, patients brought to emergency with attempted suicide were enrolled in the study, after taking informed consent from the attendant. After initial treatment, the patient's clinical history was sought via a General Health Questionnaire-28. Once recognized, participants underwent detailed psychiatric evaluation and mental state examination. Three hundred and fifty-two (352) patients were brought to the emergency with attempted suicide, of which 249 (70.7%) patients were identified with psychiatric morbidity. The most common psychiatric disorders were mood disorder (32.1%), comorbid psychiatric disorder (20.4%), and anxiety disorders (18.4%). Our study also showed that the prevalence of comorbid psychiatric disorders was significantly higher in females as compared to males, whereas substance use disorder was more common in males. The suicide rate has increased globally due to associated psychiatric disorders. Patients inflicting self-harm or failing at suicidal attempt are inclined towards attempting suicide in future. However, the social stigma associated with psychiatric disorders has heavily affected the process of successfully identifying and treating such patients. Along with focused long-term treatment, follow-up, and enhanced surveillance programs, mass awareness campaigns should be conducted to improve the knowledge and outlook of the general population towards psychiatric disorders.
doi:10.7759/cureus.14669 pmid:34079669 pmcid:PMC8159348 fatcat:csrivvgzkvcohij7gp7jmjh2wu

Frequency and causes of extraction of first permanent molar tooth in patients presented to a teaching hospital, Multan

Rabia Zafar, Jaffar Hussain Bukhari, Zoya Maryam, Muhammad Athar Khan, Sabba Rehman, Basil Khalid
2022 The Professional Medical Journal  
It is mostly in children below ten years result interpretation, mansucript writing 3 Zoya Maryam and revising it critically for important of age and has almost equal gender distribution. intellectual content  ...  Study design, data collection, writing 5 6 Sabba Rehman Basil Khalid the manuscript, formulation of tables treatment (Pit and fissure sealants, Preventive reviewed and approved. resin restoration, Endodontics  ... 
doi:10.29309/tpmj/2022.29.08.6973 fatcat:jislsqrbmjh5bejm2tncs5klxa

Classification and Computational Analysis of Arabidopsis thaliana Sperm Cell-Specific F-Box Protein Gene 3p.AtFBP113

Afsheen Malik, Alvina Gul, Rabia Amir, Faiza Munir, Mustafeez Mujtaba Babar, Syeda Marriam Bakhtiar, Muhammad Qasim Hayat, Rehan Zafar Paracha, Zoya Khalid, Hadi Alipour
2020 Frontiers in Genetics  
In plants, F-box proteins (FBPs) constitute one of the largest superfamilies of regulatory proteins. Most F-box proteins are shown to be an integral part of SCF complexes, which carry out the degradation of proteins and regulate diverse important biological processes. Anthers and pollen development have a huge importance in crop breeding. Despite the vast diversity of FBPs in Arabidopsis male reproductive organs, their role in anther and pollen development is not much explored. Moreover, a
more » ... ard nomenclature for naming FBPs is also lacking. Here, we propose a standard nomenclature for naming the FBPs of Arabidopsis thaliana uniformly and carry out a systematic analysis of sperm cell-specific FBP gene, i.e., 3p.AtFBP113 due to its reported high and preferential expression, for detailed functional annotation. The results revealed that 3p.AtFBP113 is located on the small arm of chromosome and encodes 397 amino acid long soluble, stable, and hydrophilic protein with the possibility of localization in various cellular compartments. The presence of the C-terminal F-box associated domain (FBA) with immunoglobulin-like fold anticipated its role in protein binding. Gene ontology based functional annotation and tissue-specific gene co-expression analysis further strengthened its role in protein binding and ubiquitination. Moreover, various potential post/co-translational modifications were anticipated and the predicted tertiary structure also showed the presence of characteristic domains and fold. Thus, the outcomes of the study will be useful in developing a better understating of the function of 3p.AtFBP113 during the process of pollen development, which will be helpful for targeting the gene for manipulation of male fertility that has immense importance in hybrid breeding.
doi:10.3389/fgene.2020.609668 pmid:33381153 pmcid:PMC7767997 fatcat:b723zpa645a3zaw2n6aebmkk5u

ZK Drugresist - Automatic Extraction of Drug Resistance Mutations and Expression Level Changes from Medline Abstracts

Zoya Khalid, Ugur Sezerman
2016 Proceedings of the 9th International Joint Conference on Biomedical Engineering Systems and Technologies  
Drugs are small molecules that generally work by binding to its target which is often a protein. This ligand molecule binding helps in the treatment of various diseases. Major obstacle to treat complex diseases is the phenomena underlying drug resistance mechanisms which are not fully understood so far. Previously reported literature has mentioned few of the motives behind this complex mechanism which dominantly include protein missense mutations and the changes in the expression levels of
more » ... in genes. A better understanding of these mechanisms is getting crucial for the researchers. Retrieving information on these processes can be challenging as scientific literature has huge pool of data and extracting the required information has always been a laborious task. We developed an online pipeline ZK DrugResist that automatically extracts PubMed abstracts of drug resistance paired with either mutation or expression for a given disease. Our classifier showed 97.7% accuracy with 93.5% recall and 96.5% F-measure. This system saves plenty of time in terms of data mining and also reduces efforts in retrieving information from online resources.
doi:10.5220/0005664501680173 dblp:conf/biostec/KhalidS16 fatcat:fvnjpvifujctxa4sa65vhjozmu

Role of pyruvate dehydrogenase kinases (PDK's) and their respective microRNA's in human ovarian cancer

Sheema Sameen, Zoya Khalid, Shaukat Malik
unpublished
Cancer is a metabolic disorder and in energy metabolism, pyruvate dehydrogenase kinases (PDKs) play a very vital role, which make them important candidate for involvement in cancer. The bioinformatics analysis performed on ovarian cancer data sets taken from gene expression Omnibus proved the up regulation of PDK2 and PDK4. The regulating microRNA's for these two genes were also predicted computationally, which were found down regulated in cancer and hence confirmed the over expression of PDK2
more » ... nd PDK4. Further investigations on the behaviour of PDK's and their corresponding microRNA's will provide a major breakthrough in cancer research and investigation.
fatcat:3enfcsm23jgjbiaejl23cxhk6i

Art as Resistance in Shaheen Bagh

Adrija Ghosh
2020 Forum  
However, as the likes of Kanhaiya Kumar and Umar Khalid have increasingly popularized this chant for freedom, it has become a vehicle to voice dissent.  ...  In 2014, the rapper used Kanhaiya Kumar's notorious speech and used it in his anthem against corruption, officially introducing Azadi into the mainstream, which was used by Zoya Akhtar in her latest movie  ... 
doi:10.2218/forum.30.4485 fatcat:imridiuhprappb7lu4niwscfri

IREC 2021 Program

2021 2021 12th International Renewable Engineering Conference (IREC)  
Conference (IREC) SG3: ATSGIRES3, 3:00pm -4:00pm Paper ID Title Authors Country 46 Transfer Learning Approach for Occupancy Prediction in Smart Buildings Mohamad Khalil, Stephen McGough,Zoya  ...  Adel Ben Youssef France 01:45 -02:00 Food, Water & Energy Nexus in the Arab Region: Challenges & Opportunities Khalid Salmi (RCREEE) Egypt 02:00 -02:15 Exploring the Status Quo of Water-Energy  ... 
doi:10.1109/irec51415.2021.9427802 fatcat:uvbsavncrvhs3fzaypllb3ovhe
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