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Xenbase: deep integration of GEO & SRA RNA-seq and ChIP-seq data in a model organism database

2019 Nucleic Acids Research  
Xenbase ( is a knowledge base for researchers and biomedical scientists that employ the amphibian Xenopus as a model organism in biomedical research to gain a deeper understanding of developmental  ...  Xenbase has developed a suite of tools, interfaces and data processing pipelines that transforms NCBI Gene Expression Omnibus (GEO) NGS content into deeply integrated gene expression and chromatin data  ...  In particular users and external resources (EBI/IntAct and Facebase) who beta-tested and provided feedback on the Xenbase GEO tools.  ... 
doi:10.1093/nar/gkz933 pmid:31733057 pmcid:PMC7145613 fatcat:qxn6h4lmrnbslbefc5f2q2n5ai