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WormBase: network access to the genome and biology of Caenorhabditis elegans

L. Stein
<span title="2001-01-01">2001</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hfp6p6inqbdexbsu4r7usndpte" style="color: black;">Nucleic Acids Research</a> </i> &nbsp;
WormBase (http://www.wormbase.org) is a web-based resource for the Caenorhabditis elegans genome and its biology.  ...  It builds upon the existing ACeDB database of the C.elegans genome by providing data curation services, a significantly expanded range of subject areas and a user-friendly front end.  ...  ACKNOWLEDGEMENTS This work was supported in part by NIH grant P41HG02223, as well as funding from the UK Medical Research Council and the National Library of Medicine.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/29.1.82">doi:10.1093/nar/29.1.82</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/11125056">pmid:11125056</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC29781/">pmcid:PMC29781</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/iltpmesqdfcfrpb5awizmzse3m">fatcat:iltpmesqdfcfrpb5awizmzse3m</a> </span>
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WormBase 2007

A. Rogers, I. Antoshechkin, T. Bieri, D. Blasiar, C. Bastiani, P. Canaran, J. Chan, W. J. Chen, P. Davis, J. Fernandes, T. J. Fiedler, M. Han (+21 others)
<span title="2007-12-23">2007</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hfp6p6inqbdexbsu4r7usndpte" style="color: black;">Nucleic Acids Research</a> </i> &nbsp;
Derived from the initial ACeDB database of C. elegans genetic and sequence information, WormBase now  ...  WormBase (www.wormbase.org) is the major publicly available database of information about Caenorhabditis elegans, an important system for basic biological and biomedical research.  ...  Funding to pay the Open Access publication charges for this article was provided by grant P41-HG02223 from the US National Human Genome Research Institute. Conflict of interest statement.  ... 
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WormBase: better software, richer content

E. M. Schwarz
<span title="2006-01-01">2006</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hfp6p6inqbdexbsu4r7usndpte" style="color: black;">Nucleic Acids Research</a> </i> &nbsp;
WormBase (http://wormbase.org), the public database for genomics and biology of Caenorhabditis elegans, has been restructured for stronger performance and expanded for richer biological content.  ...  Performance was improved by accelerating the loading of central data pages such as the omnibus Gene page, by rationalizing internal data structures and software for greater portability, and by making the  ...  WormBase is supported by grant P41-HG02223 from the US National Human Genome Research Institute, and by the British Medical Research Council.  ... 
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WormBase: a comprehensive resource for nematode research

Todd W. Harris, Igor Antoshechkin, Tamberlyn Bieri, Darin Blasiar, Juancarlos Chan, Wen J. Chen, Norie De La Cruz, Paul Davis, Margaret Duesbury, Ruihua Fang, Jolene Fernandes, Michael Han (+20 others)
<span title="2009-11-12">2009</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hfp6p6inqbdexbsu4r7usndpte" style="color: black;">Nucleic Acids Research</a> </i> &nbsp;
Initially created as a service to the Caenorhabditis elegans research field, WormBase has evolved into a powerful research tool in its own right.  ...  AVAILABLE SPECIES WormBase now includes information from a total of nine species: five from the Caenorhabditis genus [C. elegans, C. briggsae, C. remanei, C. brenneri and C. japonica; (2,3)]; the filarial  ...  Conflict of interest statement. None declared.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gkp952">doi:10.1093/nar/gkp952</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/19910365">pmid:19910365</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC2808986/">pmcid:PMC2808986</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/msx6exctxvfvnaurwn2fr4fd7a">fatcat:msx6exctxvfvnaurwn2fr4fd7a</a> </span>
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WormBase 2014: new views of curated biology

Todd W. Harris, Joachim Baran, Tamberlyn Bieri, Abigail Cabunoc, Juancarlos Chan, Wen J. Chen, Paul Davis, James Done, Christian Grove, Kevin Howe, Ranjana Kishore, Raymond Lee (+21 others)
<span title="2013-11-04">2013</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hfp6p6inqbdexbsu4r7usndpte" style="color: black;">Nucleic Acids Research</a> </i> &nbsp;
GENOMES AND SPECIES The C. elegans reference genome and sequence annotation Careful manual curation of the C. elegans reference genome sequence and annotation continues to be a key activity for WormBase  ...  BIOLOGICAL TOPICS CURATION For 13 years, WormBase curators have been collecting data of various types pertaining to the biology of C. elegans and related nematodes.  ...  Conflict of interest statement. None declared.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gkt1063">doi:10.1093/nar/gkt1063</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/24194605">pmid:24194605</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC3965043/">pmcid:PMC3965043</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/lh2mkgbydvfwrdngdv7nz3icme">fatcat:lh2mkgbydvfwrdngdv7nz3icme</a> </span>
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WormBase: a comprehensive data resource for Caenorhabditis biology and genomics

N. Chen
<span title="2004-12-17">2004</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hfp6p6inqbdexbsu4r7usndpte" style="color: black;">Nucleic Acids Research</a> </i> &nbsp;
WormBase (http://www.wormbase.org), the model organism database for information about Caenorhabditis elegans and related nematodes, continues to expand in breadth and depth.  ...  Over the past year, WormBase has added multiple large-scale datasets including SAGE, interactome, 3D protein structure datasets and NCBI KOGs. To accommodate this  ...  DESCRIPTION WormBase is the model organism database for the biology and genomics of Caenorhabditis elegans and Caenorhabditis briggsae.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gki066">doi:10.1093/nar/gki066</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/15608221">pmid:15608221</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC540020/">pmcid:PMC540020</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ffmlelkm4zcv3h5al6d7gsbbcq">fatcat:ffmlelkm4zcv3h5al6d7gsbbcq</a> </span>
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Using WormBase: A Genome Biology Resource for Caenorhabditis elegans and Related Nematodes [chapter]

Christian Grove, Scott Cain, Wen J. Chen, Paul Davis, Todd Harris, Kevin L. Howe, Ranjana Kishore, Raymond Lee, Michael Paulini, Daniela Raciti, Mary Ann Tuli, Kimberly Van Auken (+1 others)
<span title="">2018</span> <i title="Springer New York"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/6v4flwr6afbfrmhdyu6xe3dyvm" style="color: black;">Msphere</a> </i> &nbsp;
Explanations of the curated data and step-by-step instructions of how to access the data via the WormBase website and available data mining tools are provided.  ...  As more nematode genome sequences are becoming available and as richer data sets are published, WormBase strives to maintain updated information, displays, and services to facilitate efficient access to  ...  WormBase has a long-standing collaboration with the Caenorhabditis Genetics Center (CGC), at the University of Minnesota. The CGC collects, maintains, and distributes stocks of C. elegans.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/978-1-4939-7737-6_14">doi:10.1007/978-1-4939-7737-6_14</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/29761466">pmid:29761466</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/pmvjwlblwrf6fkwid5fm272sfq">fatcat:pmvjwlblwrf6fkwid5fm272sfq</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190429014008/https://authors.library.caltech.edu/94016/1/nihms-1011867.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/90/a4/90a46b0a976ced6a7d2580b81791334d23923c1b.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/978-1-4939-7737-6_14"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> springer.com </button> </a>

Toward 959 nematode genomes

Sujai Kumar, Georgios Koutsovoulos, Gaganjot Kaur, Mark Blaxter
<span title="">2012</span> <i title="Informa UK Limited"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/opoafxsuxfhtdcblbtedcufbpy" style="color: black;">Worm</a> </i> &nbsp;
The sequencing of the complete genome of the nematode Caenorhabditis elegans was a landmark achievement and ushered in a new era of whole-organism, systems analyses of the biology of this powerful model  ...  For all these communities, it is now clear that access to genome scale data will be key to advancing understanding, and in the case of parasites, developing new ways to control or cure diseases.  ...  At the University of Edinburgh, we especially want to thank Karim Gharbi and colleagues at the GenePool Genomics and Bioinformatics Facility for their expertise and advice on de novo genome sequencing  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.4161/worm.19046">doi:10.4161/worm.19046</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/24058822">pmid:24058822</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC3670170/">pmcid:PMC3670170</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/bnsl3sgtx5bxnelky6lnvfccui">fatcat:bnsl3sgtx5bxnelky6lnvfccui</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170815212015/http://www.research.ed.ac.uk/portal/files/11784179/2012.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/fe/db/fedbf1f1140df7686884b9755a69a15aa57febf5.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.4161/worm.19046"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3670170" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Wormpath: searching for molecular interaction networks in Caenorhabditis elegans

Peter Frommolt, Björn Schumacher
<span title="2015-04-02">2015</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/phbrgpflarcnrjkwyvkg46nvtu" style="color: black;">Source Code for Biology and Medicine</a> </i> &nbsp;
Conclusions: Our software provides highly facilitated access to C. elegans interaction data and is capable of identifying essential molecular networks within a list of differentially expressed genes.  ...  Results: We have developed Wormpath, a software for molecular network discovery which operates on the genetic and physical interaction data of the Wormbase, a comprehensive resource of molecular data on  ...  The nematode worm Caenorhabditis elegans is a widely used model organism in developmental biology and genetics [1] and subject to multiple studies based on high-throughput gene expression data (e.g.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/s13029-015-0034-6">doi:10.1186/s13029-015-0034-6</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/25866556">pmid:25866556</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC4392734/">pmcid:PMC4392734</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/t5zr7dhguzhc7b3aa7sx53koxi">fatcat:t5zr7dhguzhc7b3aa7sx53koxi</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170829221356/https://scfbm.biomedcentral.com/track/pdf/10.1186/s13029-015-0034-6?site=http://scfbm.biomedcentral.com" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/30/bb/30bb240bc9bd9602aef401ceec53f1003d97dba0.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/s13029-015-0034-6"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> springer.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4392734" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

EDGEdb: a transcription factor-DNA interaction database for the analysis of C. elegans differential gene expression

M Inmaculada Barrasa, Philippe Vaglio, Fabien Cavasino, Laurent Jacotot, Albertha J M Walhout
<span title="2007-01-18">2007</span> <i title="Springer (Biomed Central Ltd.)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/4srzxifvfrdlhjhg3dimznkp7m" style="color: black;">BMC Genomics</a> </i> &nbsp;
A long-term goal in genome biology is to map protein-DNA interaction networks of all regulatory regions in a genome of interest.  ...  Caenorhabditis elegans.  ...  Schneider and D. Jones at UMass Medical School for administration, networking and backup of our server.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/1471-2164-8-21">doi:10.1186/1471-2164-8-21</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/17233892">pmid:17233892</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC1790901/">pmcid:PMC1790901</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/liamp2b23vebhnlnvzgern4pp4">fatcat:liamp2b23vebhnlnvzgern4pp4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20100729132531/http://escholarship.umassmed.edu/cgi/viewcontent.cgi?article=2242&amp;context=oapubs" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/d8/23/d823eaf5cc75d13ca0fe034f387b3f89f244d693.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/1471-2164-8-21"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> springer.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1790901" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

C. elegans network biology: a beginning

Fabio Piano
<span title="">2006</span> <i title="WormBook"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/vukgiofe45e3bnqlxnw6dwou6q" style="color: black;">WormBook</a> </i> &nbsp;
the dynamic properties of the resulting network to be related to C. elegans biology.  ...  Perspectives The application of omic approaches to elucidate C. elegans network biology promises to extend our knowledge of cellular and organismal biology as more efforts are dedicated to the development  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1895/wormbook.1.118.1">doi:10.1895/wormbook.1.118.1</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/18050437">pmid:18050437</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/sryljpplivctfiwxvvmjuzwgf4">fatcat:sryljpplivctfiwxvvmjuzwgf4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190428100545/http://www.wormbook.org/chapters/www_networkbio/networkbio.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/51/35/5135330ca3d5b280fc8efc68bdec7fce831837b2.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1895/wormbook.1.118.1"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a>

Patterns of putative gene loss suggest rampant developmental system drift in nematodes [article]

Gavin C Woodruff
<span title="2019-05-05">2019</span> <i title="Cold Spring Harbor Laboratory"> bioRxiv </i> &nbsp; <span class="release-stage" >pre-print</span>
The nematode Caenorhabditis elegans has long been at the forefront of genetic research, yet only recently have genomic resources become available to situate this species in its comparative phylogenetic  ...  Here, patterns of gene loss within Caenorhabditis are evaluated using 28 nematode genomes (most of them sequenced only in the past few years).  ...  Bill Cresko and his laboratory members provided helpful comments throughout the development of this work.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1101/627620">doi:10.1101/627620</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/jxlrpc5lvzfypnhpdd2vsw7oeu">fatcat:jxlrpc5lvzfypnhpdd2vsw7oeu</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200325080444/https://www.biorxiv.org/content/biorxiv/early/2019/05/05/627620.full.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/06/c5/06c5248120f68850f869600c51402a25cc3936f2.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1101/627620"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> biorxiv.org </button> </a>

Nematode phospholipid metabolism: an example of closing the genome–structure–function circle

Soon Goo Lee, Joseph M. Jez
<span title="">2014</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/plpwnlpq5vechgqsnaxfmqf4wm" style="color: black;">Trends in Parasitology</a> </i> &nbsp;
As an example of how genome data, structural biology, and biochemistry integrate into a research cycle targeting parasites, we summarize the discovery of the phosphobase methylation pathway for phospholipid  ...  Over 25,000 species of nematodes have been described, and millions of species are estimated to exist [2-3].  ...  Acknowledgments The authors acknowledge support from the National Institutes of Health (AI-097119).  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.pt.2014.03.001">doi:10.1016/j.pt.2014.03.001</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/24685202">pmid:24685202</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC4040950/">pmcid:PMC4040950</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/jjcaggeqtzafzmt6zeapdfyxzm">fatcat:jjcaggeqtzafzmt6zeapdfyxzm</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20191029160448/http://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC4040950&amp;blobtype=pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/fa/4f/fa4f9a4b71c2f4f0184f93800a871faddc1eab91.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.pt.2014.03.001"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> elsevier.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4040950" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Genomics in C. elegans: So many genes, such a little worm

L. W. Hillier
<span title="2005-12-01">2005</span> <i title="Cold Spring Harbor Laboratory"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/nwro4atxwbec5pfkpfslaxbdae" style="color: black;">Genome Research</a> </i> &nbsp;
Acknowledgments The authors gratefully acknowledge the members of the C. elegans Sequencing Consortium as well as the team members of WormBase.  ...  This work has been funded by the UK Medical Research Council, the Wellcome Trust, and the National Human Genome Research Institute and the National Institute of General Medical Sciences at the National  ...  WormBase contains a wide range of information about the biology and genomics of the worm.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1101/gr.3729105">doi:10.1101/gr.3729105</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/16339362">pmid:16339362</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/xpxtxd4yhfeghbgeh2awvcvt2a">fatcat:xpxtxd4yhfeghbgeh2awvcvt2a</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200802123305/https://genome.cshlp.org/content/15/12/1651.full.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/ba/3c/ba3c5dfec475a4af298e433f5e57f899ee4e4bb7.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1101/gr.3729105"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a>

A compendium of Caenorhabditis elegans regulatory transcription factors: a resource for mapping transcription regulatory networks

John S Reece-Hoyes, Bart Deplancke, Jane Shingles, Christian A Grove, Ian A Hope, Albertha J M Walhout
<span title="2005-12-30">2005</span> <i title="BMC"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/6bzsiicmhvczjnsm7jbog7ysaa" style="color: black;">Genome Biology</a> </i> &nbsp;
Caenorhabditis elegans provides a powerful model to study such metazoan networks because its genome is completely sequenced and many functional genomic tools are available.  ...  a starting point to decipher the transcription regulatory networks that control metazoan development and function.  ...  Acknowledgements We thank Vanessa Vermeirssen, Inmaculada Barrasa and Job Dekker for reading the manuscript and members of the Hope and Walhout laboratories for suggestions.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/gb-2005-6-13-r110">doi:10.1186/gb-2005-6-13-r110</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/16420670">pmid:16420670</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC1414109/">pmcid:PMC1414109</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/htqymfxs2zf5fm7lmdyqhgfv74">fatcat:htqymfxs2zf5fm7lmdyqhgfv74</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190426180352/https://genomebiology.biomedcentral.com/track/pdf/10.1186/gb-2005-6-13-r110" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/72/b3/72b3afeb101bb68eaf9537f3934eef4e8f4265ef.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/gb-2005-6-13-r110"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1414109" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>
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