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WordCluster: detecting clusters of DNA words and genomic elements

Michael Hackenberg, Pedro Carpena, Pedro Bernaola-Galván, Guillermo Barturen, Ángel M Alganza, José L Oliver
2011 Algorithms for Molecular Biology  
Many k-mers (or DNA words) and genomic elements are known to be spatially clustered in the genome.  ...  Conclusions: WordCluster seems to predict biological meaningful clusters of DNA words (k-mers) and genomic entities.  ...  Implementation The WordCluster algorithm allows the detection of clusters for DNA words (k-mers) and genomic elements (genes, transposons, SINEs, TFBSs, etc.).  ... 
doi:10.1186/1748-7188-6-2 pmid:21261981 pmcid:PMC3037320 fatcat:epurfls7n5gvxbmtmmhpjndkja