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Webulous and the Webulous Google Add-On - a web service and application for ontology building from templates

Simon Jupp, Tony Burdett, Danielle Welter, Sirarat Sarntivijai, Helen Parkinson, James Malone
2016 Journal of Biomedical Semantics  
Webulous provides programmatic access to the template server and a client application has been developed for Google Sheets that allows templates to be loaded, populated and resubmitted to the Webulous  ...  Building ontologies by design patterns and providing simple mechanisms for the addition of new content helps reduce the overall cost and effort required to develop an ontology.  ...  Acknowledgements We acknowledge core funds from EMBL-EBI, this work is also funded in part by the National Center for Biomedical Ontology, one of the National Centers for Biomedical Computing funded by  ... 
doi:10.1186/s13326-016-0055-3 pmid:27042287 pmcid:PMC4818523 fatcat:5id6btkb5zc7bo4kgvk2phfoae

The cellular microscopy phenotype ontology

Simon Jupp, James Malone, Tony Burdett, Jean-Karim Heriche, Eleanor Williams, Jan Ellenberg, Helen Parkinson, Gabriella Rustici
2016 Journal of Biomedical Semantics  
Description: We present the Cellular Microscopy Phenotype Ontology (CMPO), a species neutral ontology for describing phenotypic observations relating to the whole cell, cellular components, cellular processes  ...  CMPO is compatible with related ontology efforts, allowing for future cross-species integration of phenotypic data.  ...  A subset of the phenotypic data used to build CMPO was provided by the EU-FP7-Systems Microscopy NoE, grant agreement no. 258068.  ... 
doi:10.1186/s13326-016-0074-0 pmid:27195102 pmcid:PMC4870745 fatcat:3su4umevqnedhdq6yn2d5p4xza

"METAGENOTE: a simplified web platform for metadata annotation of genomic samples and streamlined submission to NCBI's sequence read archive"

Mariam Quiñones, David T. Liou, Conrad Shyu, Wongyu Kim, Ivan Vujkovic-Cvijin, Yasmine Belkaid, Darrell E. Hurt
2020 BMC Bioinformatics  
This platform offers a wide selection of packages for different types of biological and experimental studies with a special emphasis on the standardization of metadata reporting.  ...  METAGENOTE ( https://metagenote.niaid.nih.gov ) is a web portal that greatly facilitates the annotation of samples from genomic studies and streamlines the submission process of sequencing files and metadata  ...  (Frederick National Laboratory for Cancer Research) for his participation during beta testing and feedback to help create a stable and user-friendly interface.  ... 
doi:10.1186/s12859-020-03694-0 pmid:32883210 fatcat:vk6zegyiinhwdfutzkqm54r6sy

A Bootstrapping Method For Automatic Constructing Of The Web Ontology Instances And Properties

Song-Il CHA
2018 Zenodo  
Previous studies for constructing ontologies from the Web have not carefully considered all the semantic features of the Web documents.  ...  With the phenomenal growth of the Web resources, to construct ontologies by using existing resources structured in the Web has gotten more and more attention.  ...  The authors are grateful to our colleagues at Centre for Natural Science Research and Information Science College for their help in collecting the Web pages and for discussing.  ... 
doi:10.5281/zenodo.1343138 fatcat:tgo2yyq26bdclnv5i6asovee5e

Eu Us Roadmap Nanoinformatics 2030 [article]

Haase, Klaessig
2018 Zenodo  
This roadmap has been jointly developed in trustful cooperation among scientists of the European Union, the United States of America and a few other countries.  ...  In particular it should be noted that some of the terms might be defined and used differently in the US versus the EU, also within different scientific disciplines and within different regulatory frameworks  ...  Webulous https://www.ebi.ac.uk/efo/webulous/ Platform of a server and a Google Spreadsheet plugin that allows using ontologies in spreadsheet.  ... 
doi:10.5281/zenodo.1486012 fatcat:yll2tsodjbgmlmyoyjfkcptxja