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A User Study on Hybrid Graph Visualizations [article]

Emilio Di Giacomo, Walter Didimo, Fabrizio Montecchiani, Alessandra Tappini
2021 arXiv   pre-print
In particular, the popular NodeTrix model, introduced by Henry, Fekete, and McGuffin in 2007, combines node-link diagrams and matrix-based representations to support the analysis of real-world networks  ...  Beyond Planar Graphs, Communications of NII Shonan Meet- ings, pp. 211–235. Springer (2020). https://doi.org/10.1007/978-981-15-6533-5 12 7.  ...  Semantic Web Inf. Syst. 9(4), 17–40 (2013). https://doi.org/10.4018/ijswis.2013100102 12.  ... 
arXiv:2108.10270v1 fatcat:kbtv3pxkjfh6xpug5vtwykkdiy

Protein complex prediction for large protein protein interaction networks with the Core&Peel Method [article]

Marco Pellegrini, Miriam Baglioni, Filippo Geraci
2016 biorxiv/medrxiv   pre-print
Availability: http://bioalgo.iit.cnr.it (via web interface) Contact: marco.pellegrini@iit.cnr.it  ...  Acknowledgments The authors would like to thank the participants to the NII Shonan Meeting "Towards the ground truth Exact algorithms for bio-informatics research", January 17-20, 2014, for their support  ...  Further tests with large random graphs are described in Additional file 1: Section 7, where we use the two stage multiple hypothesis test proposed in Fig. 12 12 Number of predicted clusters with GO enrichment  ... 
doi:10.1101/053876 fatcat:e4dynvswjzavxkounsaj7ycnqi

Protein complex prediction for large protein protein interaction networks with the Core&Peel method

Marco Pellegrini, Miriam Baglioni, Filippo Geraci
2016 BMC Bioinformatics  
Acknowledgments The authors would like to thank the participants to the NII Shonan Meeting "Towards the ground truth Exact algorithms for bio-informatics research", January 17-20, 2014, for their support  ...  Further tests with large random graphs are described in Additional file 1: Section 7, where we use the two stage multiple hypothesis test proposed in Fig. 12 12 Number of predicted clusters with GO enrichment  ...  Out of 15 measurements, Core&Peel has the best value in 12 cases, CMC in 2 cases, and ClusterOne in 1 case.  ... 
doi:10.1186/s12859-016-1191-6 pmid:28185552 pmcid:PMC5123419 fatcat:tb5zeyjk5rf4nlb66xrzbbwbj4