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Visualization and cell data analysis tool based on XML log files

Reja Alam Talukder, Karl Andersson, Mominul Ahsan
2015 2015 IEEE 40th Local Computer Networks Conference Workshops (LCN Workshops)  
This paper describes a tool that visualizes and analyzes cell data based on XML log files.  ...  The tool evaluates a mathematical expression to identify bad cells from the log file and successfully fixes most of the bad cells identified.  ...  XML Log file contains cellular data to store the mobile positioning data. Latitude and longitude data have been considered from the log file to analysis accuracy of cell data shape.  ... 
doi:10.1109/lcnw.2015.7365941 dblp:conf/lcn/TalukderAA15 fatcat:ggydqlj36vfrzhvdmskqngu3u4

A Generic Visualization Platform for CP [chapter]

Helmut Simonis, Paul Davern, Jacob Feldman, Deepak Mehta, Luis Quesada, Mats Carlsson
2010 Lecture Notes in Computer Science  
Different to most previous visualization tools, it is system independent, using a light-weight, intermediate XML format to exchange information between solvers and the visualization tools.  ...  It provides multiple views to show the search tree, and the state of constraints and variables for a postmortem analysis of a constraint program.  ...  When run in the solver, two XML log files (one for the search tree, the other for the constraint and variable visualization) are produced.  ... 
doi:10.1007/978-3-642-15396-9_37 fatcat:v772lngrv5gdtkkq7zofcecnxi

A survey on forensic investigation of operating system logs

Hudan Studiawan, Ferdous Sohel, Christian Payne
2019 Digital Investigation. The International Journal of Digital Forensics and Incident Response  
Additionally, we discuss the tools that support the examination of the event logs.  ...  In this paper, we present a comprehensive literature survey of the forensic analysis on operating system logs. We present a taxonomy of various techniques used in this area.  ...  There are some types of data such as cell phone dumps, disk images, files, and network traffic dumps.  ... 
doi:10.1016/j.diin.2019.02.005 fatcat:mtfwrofxhzedtkmchfjabplw3y

HPAanalyze: an R package that facilitates the retrieval and analysis of the Human Protein Atlas data

Anh Nhat Tran, Alex M. Dussaq, Timothy Kennell, Christopher D. Willey, Anita B. Hjelmeland
2019 BMC Bioinformatics  
HPAanalyze provides functionality for importing data tables and xml files from HPA, exporting and visualizing data, as well as downloading all staining images of interest.  ...  Access of the HPA data is mainly via web-based interface allowing views of individual proteins, which may not be optimal for data analysis of a gene set, or automatic retrieval of original images.  ...  AMD generated the website tool. ABH supervised the project, assisted with data analysis, and wrote the manuscript. All authors read and approved the final manuscript.  ... 
doi:10.1186/s12859-019-3059-z fatcat:agbmreqx5baozgxnshsjl3zrrm

Distributed Simulation and Web Map Mash-Up for Forest Fire Spread

Yosri Harzallah, Vincent Michel, Qi Liu, Gabriel Wainer
2008 2008 IEEE Congress on Services - Part I  
The emergence of recent XML-based technologies paved the way for new types of architectures and message exchanges on the Internet through Web services.  ...  An XML-based solution has been developed in order to serve performance, interoperability and usability around a two-tier architecture consisting of a Java Servlet and a Javascript client.  ...  It retrieves the simulation log file and processes it with a customized parser. Instead of sending plain text data, an XML document is generated and sent.  ... 
doi:10.1109/services-1.2008.74 dblp:conf/services/HarzallahMLW08 fatcat:d7yfyagljfcoxipnyrgdz3cpsi

cPath: open source software for collecting, storing, and querying biological pathways

Ethan G Cerami, Gary D Bader, Benjamin E Gross, Chris Sander
2006 BMC Bioinformatics  
It can serve as the core data handling component in information systems for pathway visualization, analysis and modeling.  ...  , for visualization and analysis. cPath is software only, and does not include new pathway information.  ...  cPath on multiple platforms, and performing overall quality assurance (QA) of the entire software system and providing a useful BioPAX validation tool.  ... 
doi:10.1186/1471-2105-7-497 fatcat:iadmdfgpwnbnvaif6aj5e7ywwu

HTML5 PivotViewer: high-throughput visualization and querying of image data on the web

S. Taylor, R. Noble
2014 Bioinformatics  
Motivation: Visualization and analysis of large numbers of biological images has generated a bottle neck in research.  ...  This provides a powerful method to allow end users to mine their data.  ...  ACKNOWLEDGEMENTS The authors acknowledge Jacqui Hand and Patrick van Kleef for code maintenance, bug fixes and setting up the GIT repository.  ... 
doi:10.1093/bioinformatics/btu349 pmid:24849578 pmcid:PMC4155252 fatcat:e32ni5z54fg7nncagbikewsgmu

ISAC's Gating-ML 2.0 data exchange standard for gating description

Josef Spidlen, Wayne Moore, Ryan R. Brinkman
2015 Cytometry Part A  
The lack of software interoperability with respect to gating has traditionally been a bottleneck preventing the use of multiple analytical tools and reproducibility of flow cytometry data analysis by independent  ...  Gating-ML has been significantly simplified and therefore easier to support by software tools.  ...  Linearize the data if applicable (i.e., if stored on a log scale in the FCS data file).  ... 
doi:10.1002/cyto.a.22690 pmid:25976062 pmcid:PMC4874733 fatcat:gitu43ohvfhoha2gyr2iaxpjze

Supervising Online Examination Systems Using Scientific Perception on Data

K. Bharathi, Dr.S. Balaji, P. Sindhu
2011 International Journal of Computer Science and Informatics  
The approach includes the logging of important data related to learner interaction with the system during the execution of e-tests and exploits scientific visualization to highlight information useful  ...  We have focused on the discovery of behavioral patterns of learners and conceptual relationships among test items.  ...  The Log Analyzer Application The data analysis and test visualization operations are performed by a Web-based standalone application, optionally hosted on the same server of the Logging Framework, which  ... 
doi:10.47893/ijcsi.2011.1009 fatcat:yfnhkd4ahfcwdbs46oluvpv4gq

Myokit: A simple interface to cardiac cellular electrophysiology

Michael Clerx, Pieter Collins, Enno de Lange, Paul G.A. Volders
2016 Progress in Biophysics and Molecular Biology  
Single-cell and parallelized multi-cell simulation engines are provided, as well as import and export for various formats and tools for sensitivity analysis.  ...  It is designed to be lightweight, with a focus on model development and model use.  ...  [9] and can be downloaded from the examples section on the website. Next, a single cell simulation is created and a 500ms simulation is run, storing the logged data in the SimulationLog object d.  ... 
doi:10.1016/j.pbiomolbio.2015.12.008 pmid:26721671 fatcat:jakgvjkkwnao3fq7rodml6j4gi

Collection and storage of HLA NGS genotyping data for the 17th International HLA and Immunogenetics Workshop

Chia-Jung Chang, Kazutoyo Osoegawa, Robert P. Milius, Martin Maiers, Wenzhong Xiao, Marcelo Fernandez-Viňa, Steven J. Mack
2018 Human Immunology  
For over 50 years, the International HLA and Immunogenetics Workshops (IHIW) have advanced the fields of histocompatibility and immunogenetics (H&I) via community sharing of technology,  ...  Sufficient time is also required for all parties involved to develop both the systems and tools to manage data, and the preliminary data on which to test the tools.  ...  , A: Manual IHIW XML; B: Illumina and laboratory-generated IHIW XML; C: GenDx XML; D: HLA Twin, HistoGenetics, MIA FORA and TypeStream Visual HML; E: HLA Twin and MIA FORA HML.  ... 
doi:10.1016/j.humimm.2017.12.004 pmid:29247682 pmcid:PMC5805642 fatcat:zcyjpu4ri5btho7xium5ukbyde

Flow Cytometry Bioinformatics

Kieran O'Neill, Nima Aghaeepour, Josef Špidlen, Ryan Brinkman, Shoshana Wodak
2013 PLoS Computational Biology  
resources and tools.  ...  Flow cytometry and related methods allow the quantification of multiple independent biomarkers on large numbers of single cells.  ...  Acknowledgments The version history of the text file and the peer reviews (and response to reviews) are available as supporting information in Text S1 and Text S2.  ... 
doi:10.1371/journal.pcbi.1003365 pmid:24363631 pmcid:PMC3867282 fatcat:jp7cltm3kjcqxnupcxbgflnamm

Workflows for automated downstream data analysis and visualization in large-scale computational mass spectrometry

Stephan Aiche, Timo Sachsenberg, Erhan Kenar, Mathias Walzer, Bernd Wiswedel, Theresa Kristl, Matthew Boyles, Albert Duschl, Christian G. Huber, Michael R. Berthold, Knut Reinert, Oliver Kohlbacher
2015 Proteomics  
Monolithic analysis tools perform well on single tasks but lack the flexibility to cope with the constantly changing requirements and experimental setups.  ...  analysis of large datasets and production of high-quality visualizations.  ...  analysis and visualization.  ... 
doi:10.1002/pmic.201400391 pmid:25604327 pmcid:PMC4415483 fatcat:d24pgxfo2nbohi5rwivnjcxsju

In-situ visualization using Damaris: the Code_Saturne use case

Joshua C Bowden, Francois Tessier, Charles Deltel, Simone Bnà, Gabriel Antoniu
2021 Zenodo  
, in-situ analysis, and visualization.  ...  As the exascale era approaches, maintaining scalable performance in data management tasks (storage, visualization, analysis, etc.) remains a key challenge in sustaining high performance for the application  ...  The work was achieved using the PRACE Research Infrastructure resource HAWK supercomputer based at the High-performance Computing Center (HLRS), Stuttgart, Germany.  ... 
doi:10.5281/zenodo.5547432 fatcat:ocg3b3ttcrafpi6jqy75x2hvnm

A Study on Performance Analysis Tools for Applications Running on Large Distributed Systems [article]

Ajanta De Sarkar, Nandini Mukherjee
2010 arXiv   pre-print
Performance analysis and tuning applications is becoming crucial because it is hardly possible to otherwise achieve the optimum performance of any application.  ...  The paper surveys some representative tools from different aspects in order to highlight the approaches and technologies used by them.  ...  database XML-based Data repository is used Data file Data file Data Exchange Format XML XML JavaPSL Self-Defining Data Format (SDDF) EPILOG binary trace data format Performance  ... 
arXiv:1006.2650v1 fatcat:5h7xwbpyobghvluwzqgcab5axe
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