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VisTrails provenance traces for benchmarking

Fernando Chirigati, Juliana Freire, David Koop, Cláudio Silva
2013 Proceedings of the Joint EDBT/ICDT 2013 Workshops on - EDBT '13  
INTRODUCTION The benchmark provenance traces that we have collected come from the VisTrails system for exploratory data analysis and visualization and from the VisTrails, Inc. provenance plugin for Autodesk  ...  Additionally, we include some provenance traces generated in the VisTrails plugin for Autodesk Maya [1] , which uses an early version of the VisTrails Provenance SDK [8] to transparently capture the  ... 
doi:10.1145/2457317.2457373 dblp:conf/edbt/ChirigatiFKS13 fatcat:jbnxfm3e55cxzemowxf3vtn5fy

Automatic Benchmark Profiling Through Advanced Trace Analysis [chapter]

Alexis Martin, Vania Marangozova-Martin
2016 Lecture Notes in Computer Science  
Benchmarking has proven to be crucial for the investigation of the behavior and performances of a system. However, the choice of relevant benchmarks still remains a challenge.  ...  It identifies the needed system information for profile computation, collects it from execution traces and produces profiles through efficient and reproducible trace analysis treatments.  ...  Associated with each traced event is a hardware (CPU) and a software (PID) provenance context.  ... 
doi:10.1007/978-3-319-43659-3_5 fatcat:2zqdn45binemrewmouuhwwfa6e

Using Mediation to Achieve Provenance Interoperability

Tommy Ellqvist, David Koop, Juliana Freire, Cláudio Silva, Lena Strömbäck
2009 2009 Congress on Services - I  
In this paper, we describe a mediator-based architecture for integrating provenance information from multiple sources.  ...  Provenance is essential in scientific experiments.  ...  Specifically, we plan to develop automatic mechanisms for translating highlevel provenance queries into calls to the API, for example: queries defined through a query-by-example interface [21] ; and through  ... 
doi:10.1109/services-i.2009.68 dblp:conf/services/EllqvistKFSS09 fatcat:brdioxkodvdxtbaoxrtyqvlhdy

A primer on provenance

Lucian Carata, Sherif Akoush, Nikilesh Balakrishnan, Thomas Bytheway, Ripduman Sohan, Margo Selter, Andy Hopper
2014 Communications of the ACM  
Acknowledgments We would like to thank George Coulouris for his feedback and our reviewers for their constructive comments and suggestions.  ...  VisTrails 26 and ZOOM 2 are workflow-management systems with the ability to track provenance for the execution of various workflows and (in the case of VisTrails) for the evolution of the workflows themselves  ...  trace, and ask: Where did it come from?  ... 
doi:10.1145/2596628 fatcat:votcaprhhfe25laiohnm7tc7de

A Primer on Provenance

Lucian Carata, Sherif Akoush, Nikilesh Balakrishnan, Thomas Bytheway, Ripduman Sohan, Margo Seltzer, Andy Hopper
2014 Queue  
ACKNOWLEDGMENTS We would like to thank George Coulouris for his feedback and support in shaping this article toward its current form, and our reviewers for their constructive comments and suggestions.  ...  VisTrails 26 and ZOOM 2 are workflow-management systems with the ability to track provenance for the execution of various workflows and (in the case of VisTrails) for the evolution of the workflows themselves  ...  PASS, for example, reports up to a 230 percent overhead on small file benchmarks, 23 even though the absolute increase in execution times remains small.  ... 
doi:10.1145/2602649.2602651 fatcat:p2swocpz2vhjfbffuch4oseexu

Exploring repositories of scientific workflows

Julia Stoyanovich, Ben Taskar, Susan Davidson
2010 Proceedings of the 1st International Workshop on Workflow Approaches to New Data-centric Science - Wands '10  
for effective data exploration.  ...  In the first part of the paper we consider a collection of VisTrails workflows, and explore how this collection may be summarized when workflow modules are used as features.  ...  VisTrails VisTrails is an open-source scientific workflow and provenance management system developed at the University of Utah [6] .  ... 
doi:10.1145/1833398.1833405 fatcat:7f6de6h5rbfbdaz3b7scxngdai

Towards Complete Tracking of Provenance in Experimental Distributed Systems Research [chapter]

Tomasz Buchert, Lucas Nussbaum, Jens Gustedt
2015 Lecture Notes in Computer Science  
In this paper, we (1) survey provenance collection in various domains of computer science, (2) introduce a new classification of provenance types, and (3) sketch a design of a provenance system inspired  ...  Storing the provenance of experimental data, i.e., storing information about how the results were produced, proved to be a powerful tool to address similar problems in computational natural sciences.  ...  Provenance of experiment description In this section, we provide a design for a representation of experiments that traces the provenance of the experiment description.  ... 
doi:10.1007/978-3-319-27308-2_49 fatcat:ajzcc6pu2nbhvcagaf67waas44

Characterizing Provenance in Visualization and Data Analysis: An Organizational Framework of Provenance Types and Purposes

Eric D. Ragan, Alex Endert, Jibonananda Sanyal, Jian Chen
2016 IEEE Transactions on Visualization and Computer Graphics  
We present an organizational framework of the different types of provenance information and purposes for why they are desired in the field of visual analytics.  ...  We also discuss the relationships between these factors and the methods used to capture provenance information.  ...  [43] explored unobtrusive mechanisms to facilitate provenance traces for the collection and use of sensor data.  ... 
doi:10.1109/tvcg.2015.2467551 pmid:26340779 fatcat:bujis3h24na63ldqizjqwv434a

LDV: Light-weight database virtualization

Quan Pham, Tanu Malik, Boris Glavic, Ian Foster
2015 2015 IEEE 31st International Conference on Data Engineering  
LDV addresses these issues by monitoring application execution, including DB operations, and using the resulting execution trace to create a lightweight re-executable package.  ...  We introduce a linked DB-operating system provenance model and show how to infer data dependencies based on temporal information about the DB operations performed by the application's process(es).  ...  Datasets and Workloads We use the TPC-H benchmark [25] with a scale factor 1 (1GB) for our experiments. This benchmark involves a suite of 22 decision support queries.  ... 
doi:10.1109/icde.2015.7113366 dblp:conf/icde/PhamMGF15 fatcat:syaqewvyengohbqbtddiq3e5l4

A survey of simulation provenance systems: modeling, capturing, querying, visualization, and advanced utilization

Young-Kyoon Suh, Ki Yong Lee
2018 Human-Centric Computing and Information Sciences  
In this manuscript we provide a comprehensive survey of a wide range of existing systems to utilize provenance data produced by simulation.  ...  In particular, we present a taxonomy of scientific platforms regarding provenance support and holistically tabulate the major functionalities and supporting levels of the studied systems.  ...  Sumatra [115, 116] is a provenance management and trace tool to support numerical simulation or analysis for the purpose of reproduction.  ... 
doi:10.1186/s13673-018-0150-9 fatcat:zmdmunmguvfelnlwcvnhw5wmpi

Provenance-Based Reproducibility in the Semantic Web

Luc Moreau
2011 Social Science Research Network  
To achieve the vision of reproducibility, the workflow-based community has strongly advocated the use of provenance as an underpinning mechanism for reproducibility, since a rich representation of provenance  ...  This is the problem that this paper tackles by defining a denotational semantics for the Open Provenance Model, which is referred to as the reproducibility semantics.  ...  We used the First Provenance Challenge workflow [23] , which has become a de-facto benchmark in the provenance community.  ... 
doi:10.2139/ssrn.3199517 fatcat:xe3qj4cfdzb55k3nilvvewflqi

Provenance-based reproducibility in the Semantic Web

Luc Moreau
2011 Journal of Web Semantics  
To achieve the vision of reproducibility, the workflow-based community has strongly advocated the use of provenance as an underpinning mechanism for reproducibility, since a rich representation of provenance  ...  This is the problem that this paper tackles by defining a denotational semantics for the Open Provenance Model, which is referred to as the reproducibility semantics.  ...  We used the First Provenance Challenge workflow [23] , which has become a de-facto benchmark in the provenance community.  ... 
doi:10.1016/j.websem.2011.03.001 fatcat:airtxw3c4ncele7fllg7eywyy4

The Foundations for Provenance on the Web

Luc Moreau
2010 Foundations and Trends® in Web Science  
For instance, provenance enables the reproducibility of scientific results; provenance is necessary to track attribution and credit in curated databases; and, it is essential for reasoners to make trust  ...  After identifying an open approach and a model for provenance, techniques to expose provenance over the Web are investigated.  ...  for providing feedback on this survey.  ... 
doi:10.1561/1800000010 fatcat:zggat6oky5egripxkunwkkelqm

OPQL: Querying scientific workflow provenance at the graph level

Chunhyeok Lim, Shiyong Lu, Artem Chebotko, Farshad Fotouhi, Andrey Kashlev
2013 Data & Knowledge Engineering  
queries formulated for one system will not run in another system.  ...  Most existing systems store provenance data in provenance stores with proprietary provenance data models and conduct query processing over the physical provenance storages using query languages, such as  ...  Murali Mani [27, 34] for providing valuable advices regarding OPMPROV and for sharing his expertise in the area of provenance management.  ... 
doi:10.1016/j.datak.2013.08.008 fatcat:jhxpmfqtefcalh3prsqyrmuuvu

The future of scientific workflows

Ewa Deelman, Tom Peterka, Ilkay Altintas, Christopher D Carothers, Kerstin Kleese van Dam, Kenneth Moreland, Manish Parashar, Lavanya Ramakrishnan, Michela Taufer, Jeffrey Vetter
2017 The international journal of high performance computing applications  
national security missions, to assess the current state of the art in science workflows, to understand the impact of emerging extreme-scale computing systems on those workflows, and to develop requirements for  ...  highlight use cases, computing systems, workflow needs and conclude by summarizing the remaining challenges this community sees that inhibit large-scale scientific workflows from becoming a mainstream tool for  ...  Acknowledgments The authors would like to thank all workshop participants for their contributions: Greg Abram, Gagan Agrawal, James  ... 
doi:10.1177/1094342017704893 fatcat:wkqlq7kzlnfx7acppift6ot4u4
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