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Understanding transcriptional regulation by genome-wide microarray studies can contribute to unravel complex relationships between genes. Attempts to standardize the annotation of microarray data include the Minimum Information About a Microarray Experiment (MIAME) recommendations, the MAGE-ML format for data interchange, and the use of controlled vocabularies or ontologies. The existing software systems for microarray data analysis implement the mentioned standards only partially and are oftendoi:10.1186/1471-2105-10-50 pmid:19200358 pmcid:PMC2645365 fatcat:vmficlw2vnfuvggnegr4zvyp5q