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A database server for next-generation scientific data management

Mohamed Y. Eltabakh, Walid G. Aref, Ahmed K. Elmagarmid
2010 2010 IEEE 26th International Conference on Data Engineering Workshops (ICDEW 2010)  
The thesis work presented in this paper proposes a database server for next-generation scientific data management.  ...  The proposed sever realizes two core requirements in scientific databases, mainly, (1) Annotation management, and (2) Complex dependencies involving human actions.  ...  Our plans for future work include: (1) management of scientific workflows, (2) annotation and provenance management in XML databases, (3) management of data conflicts in scientific databases, and (4)  ... 
doi:10.1109/icdew.2010.5452723 dblp:conf/icde/EltabakhAE10 fatcat:m3poj7ig3bfetbpgggcm7zrofq

The national ignition facility

Robert W. Carey, Paul J. Van Arsdall, John P. Woodruff
2002 Proceedings of the 2002 annual ACM SIGAda international conference on Ada The engineering of correct and reliable software for real-time & distributed systems using Ada and related technologies - SIGAda '02  
The NDR is a federated database that provides for the capture of: experimental campaign plans, machine configuration & calibration data, raw experimental results and the processed results produced by scientific  ...  The NDR provides for metadata, pedigree, quality, effectivity, versioning and access control for each of the data categories.  ...  Neither the United States government nor Lawrence Livermore National Security, LLC, nor any of their employees makes any warranty, expressed or implied, or assumes any legal liability or responsibility for  ... 
doi:10.1145/589451.589454 dblp:conf/sigada/CareyAW02 fatcat:hz3hfmunt5ch7bp5fvdvlpi57m

PROVISION OF DATABASES IN THE POZNAN SUPERCOMPUTING AND NETWORKING CENTER

SŁAWOMIR NIWIŃSKI, IWONA PUJANEK, MACIEJ STROIŃSKI
2003 TASK Quarterly  
and efficient database access management.  ...  The article presents a concise report on the experience gained in the last three years in the scope of network provision of bibliographic databases by the Institute for Scientific Information (ISI) and  ...  typical for XML documents, the development of appropriate transaction models, devising new access methods (including methods of updating XML data), versioning and configuration management.  ... 
doaj:f5e875d46f444d33b529ad817109dc29 fatcat:uajv2wcwhzhdnpfxg2ylvupdqu

A Set of Simple Tools For Assembling, Annotating, Versioning and Publishing Taxonomies

Laura Rocha Prado
2021 Biodiversity Information Science and Standards  
The main goal for the majority of biodiversity aggregators, databases, and software developed specifically for managing scientific names, biological samples and other occurrences has been to establish  ...  the database Store and publish versioned taxonomies generated with the Curator API endpoints for automation (JSON/XML formats/CSV download) Optional unique identifier/DOI generation for published taxonomies  ...  The main goal for the majority of biodiversity aggregators, databases, and software developed specifically for managing scientific names, biological samples and other occurrences has been to establish  ... 
doi:10.3897/biss.5.75344 fatcat:qxy5xagmo5h2zf7irhmqpmgo4i

Tracing Lineage in Multi-version Scientific Databases

Mingwu Zhang, Daisuke Kihara, Sunil Prabhakar
2007 2007 IEEE 7th International Symposium on BioInformatics and BioEngineering  
The critical need for better tracing of lineage in scientific databases is well known [6] .  ...  We study alternatives for managing versions, and propose a model for the example application of protein annotations.  ...  and manage scientific data.  ... 
doi:10.1109/bibe.2007.4375599 dblp:conf/bibe/ZhangKP07 fatcat:jflnzvi64vgzrogtr7kvywfme4

Managing an Economic Journal Efficiently: Trends and Challenges
Эффективное управление экономическим журналом: тренды, тенденции, вызовы

Oksana Medvedeva, Alina Zhuk
2019 Economic and Social Changes: Facts, Trends, Forecast  
Zhuk -Head of the Scientific Periodicals Group at the Russian Presidential Academy of National Economy and Public Administration, secretary of the Section of Economic Journals of the ASEP (Moscow, Russian  ...  SCIENTIFIC LIFE Publication -2019: Strategy and Tactics of Management and Development".  ...  The speaker conducted a study on the procedures for mechanical citation counting on the basis of the data obtained from the thematic (economic) international database RePEc 4 .  ... 
doi:10.15838/esc.2019.4.64.15 fatcat:qnylhil34vgl5or2473tlmahiq

A regional database management system—the fisheries resource information system and tools (FiRST): Its design, utility and future directions

L.R. Garces, G.T. Silvestre, I. Stobutzki, F.C. Gayanilo, F. Valdez, M. Saupi, T. Boonvanich, M. Roongratri, P. Thouc, Purwanto, I. Haroon, K.N. Kurup (+6 others)
2006 Fisheries Research  
The regional database is an important regional resource for coastal fisheries management complementing national fisheries catch statistics.  ...  This article describes the refined version of FiRST (version 2004) and provides examples on how the database ('TrawlBase') has been used to date for analyses aimed at establishing historic resource baselines  ...  (ii) expand the coverage of the database geographically, temporally and the range of anthropogenic impacts; (iii) examine key scientific questions at a range of management scales for input into management  ... 
doi:10.1016/j.fishres.2006.02.003 fatcat:hg6ivsf6rfgoxdsw27z7a3axva

Publishing Life Science Data as Linked Open Data: the Case Study of miRBase [article]

Theodore Dalamagas, Nikos Bikakis, George Papastefanatos, Yannis Stavrakas, Artemis G. Hatzigeorgiou
2012 arXiv   pre-print
Legacy data from two well-known microRNA databases with experimental data and observations, as well as change and version information about microRNA entities, are fused and exported as LOD.  ...  This paper presents our Linked Open Data (LOD) infrastructures for genomic and experimental data related to microRNA biomolecules.  ...  CHANGE AND VERSION MANAGEMENT The miRBase database is a searchable database of published miRNA sequences and annotation. The miRBase database maintains info for 18443 hairpins and 49670 matures.  ... 
arXiv:1205.2320v1 fatcat:kzb6dfhndneipg3td7mgifx7pm

Niles & Associates, Inc. Berkely, California, USA

M. A. Semenov
1997 Annals of Botany  
First, it is a database manager which specializes in creating, managing and sorting a personal lib~ary of references.  ...  Reference libraries are compatible with prevIOUS verSIOns for DOS and Apple-Macintosh. Installation on to a PC is straightforward.  ...  First, it is a database manager which specializes in creating, managing and sorting a personal lib~ary of references.  ... 
doi:10.1006/anbo/79.5.583 fatcat:2xqf2qw3ovcshglbuzdslhf3w4

Managing scientific data

Anastasia Ailamaki
2011 Proceedings of the 2011 international conference on Management of data - SIGMOD '11  
The inefficiency of existing database management systems (DBMSs) for addressing the requirements of scientists has led to many application-specific systems.  ...  managing the enormous amount of scientific data being collected is the key to scientific progress. though technology allows for the extreme collection rates of scientific data, processing is still performed  ...  Representative versioning solutions (such as the concurrent versions system) compute differences between sequential versions and use the differences for version reconstruction.  ... 
doi:10.1145/1989323.1989433 dblp:conf/sigmod/Ailamaki11 fatcat:3cxviarugnfoldnqz3csgjczqu

Managing scientific data

Anastasia Ailamaki, Verena Kantere, Debabrata Dash
2010 Communications of the ACM  
The inefficiency of existing database management systems (DBMSs) for addressing the requirements of scientists has led to many application-specific systems.  ...  managing the enormous amount of scientific data being collected is the key to scientific progress. though technology allows for the extreme collection rates of scientific data, processing is still performed  ...  Representative versioning solutions (such as the concurrent versions system) compute differences between sequential versions and use the differences for version reconstruction.  ... 
doi:10.1145/1743546.1743568 fatcat:vw57d23aorchtntng6jlrccs6y

On Image Database File HANABACHI Based on the Japanese Bees

Osamu Tadauchi, Ahmatjan Dawut, Hitoshi Inoue
2001 Esakia : occasional papers of the Hikosan Biological Laboratory in Entomology  
It is managed by a management system SIGMA.  ...  An image database file HANABACHI based on the Japanese bees is constructed and is open to the public on Internet.  ...  Arikawa, Head of the SIGMA Project Group of Kyushu University for their various help.  ... 
doi:10.5109/2653 fatcat:2426knhcgbcrjd7hfiiufne7su

Math-Net.Ru as a Digital Archive of the Russian Mathematical Knowledge from the XIX Century to Today [chapter]

Dmitry E. Chebukov, Alexander D. Izaak, Olga G. Misyurina, Yuri A. Pupyrev, Alexey B. Zhizhchenko
2013 Lecture Notes in Computer Science  
database and to provide access to full-text articles for broad international mathematical community.  ...  The main goal of the project Math-Net.Ru is to collect scientific publications in Russian and Soviet mathematics journals since their foundation to today and the authors of these publications into a single  ...  English version journals are supplied with the classical Impact Factors calculated by the Institute for Scientific Information (ISI) of the Thomson Reuters Corporation (ISI Web of Knowledge).  ... 
doi:10.1007/978-3-642-39320-4_26 fatcat:x37iwmtbhvaa7muswqyz4a3cie

An ontology-centric architecture for extensible scientific data management systems

Yuan-Fang Li, Gavin Kennedy, Faith Ngoran, Philip Wu, Jane Hunter
2013 Future generations computer systems  
In this paper we present an ontologycentric architecture for data management systems that is extensible and domain independent.  ...  Data management has become a critical challenge faced by a wide array of scientific disciplines in which the provision of sound data management is pivotal to the achievements and impact of research projects  ...  Finally we wish to thank Dr Xavier Sirault and Dr Kai Xu for their assistance in developing the domain models.  ... 
doi:10.1016/j.future.2011.06.007 fatcat:xswbe7m46nfq7hyrvvmc3czjgu

PODD - Towards an Extensible, Domain-Agnostic Scientific Data Management System

Yuan-Fang Li, Gavin Kennedy, Faith Davies, Jane Hunter
2010 2010 IEEE Sixth International Conference on e-Science  
In this paper we present PODD, an ontology-centric architecture for data management systems that is extensible and domain independent.  ...  Data management has become a critical challenge faced by a wide array of scientific disciplines in which the provision of sound data management is pivotal to the achievements and impact of research projects  ...  Kai Xu for the discussion and assistance in the development of the PODD ontologies and the PODD repository system.  ... 
doi:10.1109/escience.2010.44 dblp:conf/eScience/LiKDH10 fatcat:l3imi3tdzvhdvar2roxlcfokiq
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