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Vec2SPARQL: integrating SPARQL queries and knowledge graph embeddings [article]

Maxat Kulmanov, Senay Kafkas, Andreas Karwath, Alexander Malic, Georgios V Gkoutos, Michel Dumontier, Robert Hoehndorf
2018 biorxiv/medrxiv   pre-print
We have developed a Vec2SPARQL, which is a general framework for integrating structured data and their vector space representations.  ...  For example, SPARQL endpoints make your data interoperable and available to the world. SPARQL queries can be executed across multiple endpoints.  ...  The copyright holder for this preprint (which . http://dx.doi.org/10.1101/463778 doi: bioRxiv preprint first posted online Nov. 7, 2018; Vec2SPARQL: integrating SPARQL queries and knowledge graph embeddings  ... 
doi:10.1101/463778 fatcat:x3qi6swk3jedhevqdpza7cayq4

Vec2SPARQL: integrating SPARQL queries and knowledge graph embeddings

Maxat Kulmanov, Şenay Kafkas, Andreas Karwath, Alexander Malic, Georgios V Gkoutos, Michel Dumontier, Robert Hoehndorf
2018 Figshare  
We have developed a Vec2SPARQL, which is a general frame-work for integrating structured data and their vector space representations.Vec2SPARQL allows jointly querying vector functions such as computing  ...  SPARQL queries can be executed across multi-ple endpoints.  ...  We can use Vec2SPARQL to perform queries of a knowledge graph of mouse genes, diseases and phenotypes and incorporate Vec2SPARQL similarity functions.  ... 
doi:10.6084/m9.figshare.7356416.v2 fatcat:iqvn3jbotzhc3ne4wfchrqfh4q

vec2sparql.pdf [article]

Maxat Kulmanov, Şenay Kafkas, Andreas Karwath, Alexander Malic, Georgios V Gkoutos, Michel Dumontier, Robert Hoehndorf
2018 Figshare  
SPARQL queries can be executed acrossmultiple endpoints.We have developed a Vec2SPARQL, which is a general framework forintegrating structured data and their vector space representations.Vec2SPARQL allows  ...  jointly querying vector functions such as computingsimilarities (cosine, correlations) or classifications with machinelearning models within a single SPARQL query.  ...  feature vectors into knowledge-graphs 7 / 20 SPARQL querying structured data enables data sharing and integration 8 / 20 Vec2SPARQL 9 / 20 Vec2SPARQL Vec2SPARQL provides a set of functions  ... 
doi:10.6084/m9.figshare.7423673.v1 fatcat:oazrqudbznfvlj2uusc2ob432q

Predicting Gene Functions and Phenotypes by combining Deep Learning and Ontologies

Maxat Kulmanov
2020
improved systems for neural-symbolic integration.  ...  We developed and expanded novel methods for representation learning, predicting protein functions and their loss of function phenotypes.  ...  Ethics approval and consent to participate Not applicable.  ... 
doi:10.25781/kaust-13x08 fatcat:q7ax747vebaphb5ybowvxcofna