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VARiD: A variation detection framework for color-space and letter-space platforms

A. V. Dalca, S. M. Rumble, S. Levy, M. Brudno
2010 Bioinformatics  
Results: We present VARiD-a probabilistic method for variation detection from both letter-and color-space reads simultaneously.  ...  While combining data from the various platforms should increase the accuracy of variation detection, to date there are only a few tools that can identify variants from color space data, and none that can  ...  ACKNOWLEDGEMENTS We thank Adrian Dalca Sr for help with the implementation.  ... 
doi:10.1093/bioinformatics/btq184 pmid:20529926 pmcid:PMC2881369 fatcat:qnejbeht3rhyzh2ivyewzoftau

Genome variation discovery with high-throughput sequencing data

A. V. Dalca, M. Brudno
2010 Briefings in Bioinformatics  
In this paper, we overview HTS technologies and discuss several of the plethora of algorithms and tools designed to analyze HTS data, including algorithms for read mapping, as well as methods for identification  ...  The advent of high-throughput sequencing (HTS) technologies is enabling sequencing of human genomes at a significantly lower cost.  ...  Another pipeline, VARiD (Dalca et al., in preparation; allows for the discovery of SNPs and small indels from color-space and letter-space data simultaneously.  ... 
doi:10.1093/bib/bbp058 pmid:20053733 fatcat:rmhcyfmaovchnndc7a7b3durni

STATL: An attack language for state-based intrusion detection

Steven T. Eckmann, Giovanni Vigna, Richard A. Kemmerer
2002 Journal of Computer Security  
An implementation of the runtime support for the STATL language has been developed and a toolset of intrusion detection systems based on STATL has been implemented.  ...  The state transition analysis technique has been used for both host-based and network-based intrusion detection.  ...  Government is authorized to reproduce and distribute reprints for Governmental purposes notwithstanding any copyright annotation thereon.  ... 
doi:10.3233/jcs-2002-101-204 fatcat:d66y5ghy6fckhcu3whwftj4rqu

Object interaction in real-time virtual environments

Marcelo Kallmann
The agent common environment (ACE) system is extendible and controllable with interactive Python scripts, and has been used as a system platform for research on behavioral animation.  ...  The proposed approach is based on a complete definition and representation for interactive objects.  ...  detection with the manipulation space, and automatic decision and dynamic update of hand configurations and placements.  ... 
doi:10.5075/epfl-thesis-2347 fatcat:jeo5b2m6inbzlptobxbpetoo7y

Runtime Testing of Dynamically Adaptable and Distributed Component-based Systems

Mariam Lahami, Moez Krichen, Mohamed Jmaiel
2017 unpublished
evolved user requirements and context variations.  ...  For instance, a colored bar indicates the success of the test (i.e., with a green color) or its failure (i.e., with a red color) and a text field provides information about the reasons of failure.  ...  On the one hand, we propose a standardized test execution platform that executes safely and efficiently runtime tests while respecting resource availability and node connectivity.  ... 
doi:10.13140/rg.2.2.27236.73600 fatcat:pxsnz64icnhuxbcirbpgeovw3q

Thirty-seventh Annual Meeting February 14-18, 1993 Washington Convention Center Washington, D.C. Tuesday Symposia and Posters, Part IV

1993 Biophysical Journal  
Recently carbon-fiber microelectrodes have been used for electrochemical detection of catecholamine release from single vesicles of adrenal chromaffin cells (Wightman et al, 1991, PNAS 88:10754-10758;  ...  Our interp tion is that a mobile buffer lie EGTA may enhance calcium uptakoe by overcoming diffusion limitations in the space surrounding the uptakce sites. Supped by NIH NS-19194.  ...  All use the madnes image file format (M.Stanton) for autodocumentation of the analysis and easy data exchange across computer platforms.  ... 
doi:10.1016/s0006-3495(93)81407-3 fatcat:e2el5ck7qneidoaqcbrj4lmbs4