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Using circular dot pattern code tag for medical information on the round type medical package

Jae Youn Shim, Seong Whan Kim
2016 International Journal of Advanced Media and Communication  
In this paper, we propose circular dot pattern code (CDPC) tag for cylindrical and round type medical bottle identification and management.  ...  Medical applications have strong needs for embedded tags on medical bottles to facilitate medicine management. One-dimensional (1D) barcode cannot represent the required information capacity.  ...  Acknowledgements This work was supported by the 2014 Research Fund of the University of Seoul.  ... 
doi:10.1504/ijamc.2016.079105 fatcat:7cvi7tqm6vhbhhvqebojjjzcbm

Embedding and Identifying Medical Information on Round-Shaped Vials Using Circular Dot Pattern Code and Topological Graph Matching-Based Detection Scheme

Jae Youn Shim, Seong Whan Kim
2017 International Journal of Control and Automation  
In this paper, a robust circular dot pattern code (CDPC) for tagging medical information on cylindrical and round type bottles for identification and management is proposed.  ...  Originally, CDPC was designed using the topological layout of dot code, and is well suited to recognizing tags in curvature environments.  ...  Acknowledgments This work was supported by the 2014 Research Fund of the University of Seoul.  ... 
doi:10.14257/ijca.2017.10.4.33 fatcat:byik2tqjzvfjvk55x35bntx4zi

Mitotic fidelity requires transgenerational action of a testis-restricted HP1

Mia T Levine, Helen M Vander Wende, Harmit S Malik
2015 eLife  
This delay leads to a failure of paternal chromosomes, particularly the heterochromatin-rich sex chromosomes, to separate on the first mitotic spindle.  ...  Sperm-packaged DNA must undergo extensive reorganization to ensure its timely participation in embryonic mitosis.  ...  Acknowledgements The authors thank B Wakimoto, L Jones, K Ahmad, P Fisher, and Y Yamashita for reagents, J Vasquez for microscopy support, and A Larracuente for the IGS probe sequences. We thank  ... 
doi:10.7554/elife.07378 pmid:26151671 pmcid:PMC4491702 fatcat:exnr2lhoezb75idtfwosksyd5e

Method of the Year: spatially resolved transcriptomics

Vivien Marx
2021 Nature Methods  
Cai applied super-resolution microscopy to cram discernible fluorescent dots into an imaged cell. The dots can be tagged RNA, DNA or protein.  ...  The new nanoString technology also uses photocleavable tags for gene-expression profiling of tissue, including formalin-fixed paraffin-embedded tissue.  ... 
doi:10.1038/s41592-020-01033-y pmid:33408395 fatcat:x3zlfbfpizakdpojuih2a32iku

Integrating Digital Pens in Breast Imaging for Instant Knowledge Acquisition

Daniel Sonntag, Markus Weber, Alexander Cavallaro, Matthias Hammon
2014 The AI Magazine  
In order to improve reporting practices in breast imaging, we allow the radiologist to write structured reports with a special pen on paper with an invisible dot pattern.  ...  We describe our real-time digital paper application and focus on the use case study of our deployed application.  ...  01MQ07016 and the EIT ICT Labs in the Medical Cyber-Physical Systems activity.  ... 
doi:10.1609/aimag.v35i1.2501 fatcat:nixbgkobbzgnjh3qgtoqcnlp3q

Statistical data presentation

Junyong In, Sangseok Lee
2017 Korean Journal of Anesthesiology  
Furthermore, each data set needs to be presented in a certain way depending on what it is used for. Planning how the data will be presented is essential before appropriately processing raw data.  ...  Furthermore, we Statistical Round Data are usually collected in a raw format and thus the inherent information is difficult to understand.  ...  Graph presentation Whereas tables can be used for presenting all the information, graphs simplify complex information by using images and emphasizing data patterns or trends, and are useful for summarizing  ... 
doi:10.4097/kjae.2017.70.3.267 pmid:28580077 pmcid:PMC5453888 fatcat:s2vkl27cinatzg5earkryxowby

Competitive endogenous RNA networks: integrated analysis of non-coding RNA and mRNA expression profiles in infantile hemangioma

Jun Li, Qian Li, Ling Chen, Yanli Gao, Bei Zhou, Jingyun Li
2018 OncoTarget  
Here, we used the Ribo-Zero RNA-Seq and HiSeq methods to examine the global expression profi les of proteincoding transcripts and non-coding RNAs, including miRNAs and lncRNAs, in IH and matched normal  ...  In conclusion, our study uncovered a competitive endogenous RNA (ceRNA) network that could further the understanding of the mechanisms underlying IH development and supply new targets for investigation  ...  ACKNOWLEDGMENTS AND FUNDING This study was supported by the Nanjing Science and Technology project (201503047); the Jiangsu Provincial Medical Youth Talent; and the Jiangsu Maternal and Child Health Research  ... 
doi:10.18632/oncotarget.23946 pmid:29552284 pmcid:PMC5844720 fatcat:j7jjmmrjrzggjix333ju2bpimy

Introduction to differential gene expression analysis using RNA-seq [article]

Friederike Dündar, Luce Skrabanek, Paul Zumbo
2015 Zenodo  
Contains ready-to-use UNIX and R code; covers the most common application of bulk RNA-seq to identify genes that are differentially expressed when comparing two conditions.  ...  Comprehensive introduction to the processing and analysis of bulk RNA-seq data including basic information about Illumina-based short read sequencing, common file formats (FASTQ, SAM/BAM, BED, ...) and  ...  Rounded rectangles represent QC procedures, hexagons represent decisionmaking steps, and dotted lines represent QC procedures that are optional or applicable to only certain types of studies.  ... 
doi:10.5281/zenodo.3985047 fatcat:3alrj267mneepdfmm5wzppppbe

ReScan, a Multiplex Diagnostic Pipeline, Pans Human Sera for SARS-CoV-2 Antigens [article]

Colin R. Zamecnik, Jayant V. Rajan, Kevin A. Yamauchi, Sabrina A. Mann, Gavin M. Sowa, Kelsey C. Zorn, Bonny D. Alvarenga, Mars Stone, Philip J. Norris, Wei Gu, Charles Y Chiu, Joseph L. DeRisi (+1 others)
2020 biorxiv/medrxiv   pre-print
These arrays could form the basis of a multiplexed COVID-19 serologic assay with enhanced specificity. ReScan has broad applicability for serologic assay development.  ...  With ReScan, a new diagnostic development workflow which combines the isolation of phage expressing the most immunogenic peptides with paper-based microarrays manufactured via acoustic liquid handling,  ...  Dotblotr package and source code are available on the Chan Zuckerberg Biohub GitHub repository.  ... 
doi:10.1101/2020.05.11.20092528 fatcat:g3hqcdaiwnaknbpcccxs4at44y

Introduction to differential gene expression analysis using RNA-seq [article]

Friederike Dündar, Luce Skrabanek, Paul Zumbo
2020 Zenodo  
Contains ready-to-use UNIX and R code; covers the most common application of bulk RNA-seq to identify genes that are differentially expressed when comparing two conditions.  ...  Comprehensive introduction to the processing and analysis of bulk RNA-seq data including basic information about Illumina-based short read sequencing, common file formats (FASTQ, SAM/BAM, BED, ...) and  ...  Rounded rectangles represent QC procedures, hexagons represent decisionmaking steps, and dotted lines represent QC procedures that are optional or applicable to only certain types of studies.  ... 
doi:10.5281/zenodo.4390117 fatcat:cijrio4upzas5ovxw6yezqtbka

ReScan, a Multiplex Diagnostic Pipeline, Pans Human Sera for SARS-CoV-2 Antigens

Colin R. Zamecnik, Jayant V. Rajan, Kevin A. Yamauchi, Sabrina A. Mann, Rita P. Loudermilk, Gavin M. Sowa, Kelsey C. Zorn, Bonny D. Alvarenga, Christian Gaebler, Marina Caskey, Mars Stone, Philip J. Norris (+10 others)
2020 Cell Reports Medicine  
from antigen discovery to diagnostic using one recombinant protein source.  ...  9 candidate antigens, 8 of which are derived from the 2 proteins used for SARS-CoV-2 serologic assays: spike and nucleocapsid proteins.  ...  Dotblotr package and source code are available on the Chan Zuckerberg Biohub GitHub repository.  ... 
doi:10.1016/j.xcrm.2020.100123 pmid:32995758 pmcid:PMC7513813 fatcat:mej2qlomj5gilhh4qnez5oz6yu

Topicality Reconsidered: A Multidisciplinary Inquiry into Topical Relevance Relationships

Xiaoli Huang
2009 Zenodo  
The findings from the analysis contribute to the foundation work of information organization, intellectual access / information retrieval, and knowledge discovery.  ...  topicality, which involves an indepth examination of literatures and empirical data and an inductive development of a faceted typology (containing 227 fine-grained topical relevance relationships and 33 types  ...  The section uses one selected sample answer coding to demonstrate the top-level relevance structure for each of the three diagnostic question types.  ... 
doi:10.5281/zenodo.3475965 fatcat:ajmdssk34jbmtkeswj53w6mf6y

eccDNAs are apoptotic products with high innate immunostimulatory activity

Yuangao Wang, Meng Wang, Mohamed Nadhir Djekidel, Huan Chen, Di Liu, Frederick W. Alt, Yi Zhang
2021 Nature  
Extrachromosomal circular DNA elements (eccDNAs) have been described in the literature for several decades, and are known for their broad existence across different species1,2.  ...  Importantly, we demonstrated that eccDNAs can function as potent innate immunostimulants in a manner that is independent of eccDNA sequence but dependent on eccDNA circularity and the cytosolic DNA sensor  ...  Yin for allowing us to use the AFM instrument and J. Lieberman for critical reading of the manuscript. H.C. was supported by a Leukemia and Lymphoma Society Fellow Award.  ... 
doi:10.1038/s41586-021-04009-w pmid:34671165 pmcid:PMC9295135 fatcat:cjj53gc3yfcqddwmr5nvdofg2a

Filamin A-Hinge Region 1-EGFP: A Novel Tool for Tracking the Cellular Functions of Filamin A in Real-Time

Jesús Planagumà, Laura Minsaas, Mónica Pons, Lene Myhren, Georgina Garrido, Anna M. Aragay, Patricia T. Bozza
2012 PLoS ONE  
In this novel imaging tool, we introduced the EGFP-tag inside the flexible hinge 1 region of FLNa between two calpain cleavage sites.  ...  FLNa-EGFP allowed us to demonstrate the interaction of FLNa with the chemokine receptor CCR2B in endocytic vesicles after CCL2 ligand stimulation.  ...  Ellingsen and Kyaw Moe for technical support; Saima Butt for the stable HEK293 cells expressing CCR2B.  ... 
doi:10.1371/journal.pone.0040864 pmid:22870205 pmcid:PMC3411599 fatcat:h7kpj5yhnjcphn7lekkmbi7iu4

Self-organizing Single-Rosette Brain Organoids from Human Pluripotent Stem Cells [article]

Andrew M Tidball, Wei Niu, Qianyi Ma, Taylor N Takla, J Clayton Walker, Joshua L Margolis, Sandra P Mojica-Perez, Roksolana Sudyk, Shannon J Moore, Ravi Chopra, Vikram G Shakkottai, Geoffrey G Murphy (+2 others)
2022 bioRxiv   pre-print
The reproducibility of this method has allowed us to demonstrate robust structural phenotypes arising from chemical teratogen exposure or when modeling a genetic neurodevelopmental epileptic disorder.  ...  Rather than patterning a 3-dimensional embryoid body, we initiate brain organoid formation from a 2-dimensional monolayer of human pluripotent stem cells (hPSCs) that is patterned with small molecules  ...  ACKNOWLEDGEMENTS Part of this research was made possible through the Allen Cell Collection, available from Coriell Institute for Medical Research.  ... 
doi:10.1101/2022.02.28.482350 fatcat:26dmxxgouzgbtp5yyy7ehzue3q
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