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Using 3D Non Rigid FFD-Based Method to Register post mortem 3D Histological Data and in vivo MRI of a Baboon Brain [chapter]

T. Delzescaux, J. Dauguet, F. Condé, R. Maroy, V. Frouin
2003 Lecture Notes in Computer Science  
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doi:10.1007/978-3-540-39903-2_125 fatcat:ob6gkzx7kfaodhofdtqti427bq

Three-dimensional reconstruction of stained histological slices and 3D non-linear registration with in-vivo MRI for whole baboon brain

Julien Dauguet, Thierry Delzescaux, Françoise Condé, Jean-François Mangin, Nicholas Ayache, Philippe Hantraye, Vincent Frouin
2007 Journal of Neuroscience Methods  
The correlation between post-mortem data and in-vivo brain images is of high interest for studying neurodegenerative diseases.  ...  Each stained histological section of the baboon brain was first registered to its corresponding blockface photograph using a novel "hemi-rigid" transformation.  ...  Acknowledgments We would like to thank Xavier Drouot, Stéphane Palfi and Haruhiko Kishima for involving us in the cortical stimulation study and for the in-vivo imaging of the baboons.  ... 
doi:10.1016/j.jneumeth.2007.04.017 pmid:17560659 fatcat:tau7ljpkavdfrd3vv66rfzezwq

A Survey of Methods for 3D Histology Reconstruction

Jonas Pichat, Juan Eugenio Iglesias, Tarek Yousry, Sébastien Ourselin, Marc Modat
2018 Medical Image Analysis  
We then successively describe methods for 3D histology recontruction without and with the help of 3D medical imaging.  ...  This paper reviews almost three decades of methods for 3D reconstruction from serial sections, used in the study of many different types of tissue.  ...  Acknowledgements The authors would like to thank Dr. Smriti Patodia, from UCL Institute of Neurology (Department of Neuropathology), for her comments on Section 2 and the images used in Figures  ... 
doi:10.1016/j.media.2018.02.004 pmid:29502034 fatcat:ta5hlvqjpzenxhltfwh6p4mhqq