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Study of Overlapping Clustering Algorithms Based on Kmeans through FBcubed Metric [chapter]

Argenis A. Aroche-Villarruel, J. A. Carrasco-Ochoa, José Fco. Martínez-Trinidad, J. Arturo Olvera-López, Airel Pérez-Suárez
2014 Lecture Notes in Computer Science  
In this paper we present a study of the overlapping clustering algorithms OKM, WOKM and OKMED, which are extensions to the overlapping case of the well known Kmeans algorithm proposed for building partitions  ...  Different to other previously reported comparisons, in our study we compare these algorithms using the external evaluation metric FBcubed which takes into account the overlapping among clusters and we  ...  This work was partly supported by the National Council of Science and Technology of Mexico (CONACyT) through the project grants CB2008-106443 and CB2008-106366; and the scholarship grant 362371.  ... 
doi:10.1007/978-3-319-07491-7_12 fatcat:kpxwswqwljgezok76kkizyx47u

Overlapping clustering based on kernel similarity metric [article]

Chiheb-Eddine Ben N'Cir and Nadia Essoussi and Patrice Bertrand
2012 arXiv   pre-print
In this paper, we propose the use of another measure for overlapping clustering based on a kernel similarity metric .We also estimate the number of overlapped clusters using the Gram matrix.  ...  in overlapping clustering.  ...  Methodology The overall objective of this study is to improve overlapping clustering quality. For this purpose, two advantages of kernel methods are carried to improve results.  ... 
arXiv:1211.6859v1 fatcat:prbowhv4tvflbktduauvclhfwy

KLF4 N-Terminal Variance Modulates Induced Reprogramming to Pluripotency

Shin-Il Kim, Fabian Oceguera-Yanez, Ryoko Hirohata, Sara Linker, Keisuke Okita, Yasuhiro Yamada, Takuya Yamamoto, Shinya Yamanaka, Knut Woltjen
2015 Stem Cell Reports  
Notably, the cassettes employed one of two KLF4 variants, differing only by nine N-terminal amino acids, which generated dissimilar protein stoichiometry.  ...  Reprogramming responses varied in the extent of initiation and stabilization of transgene-independent pluripotency.  ...  ACKNOWLEDGMENTS We thank Kazutoshi Takahashi, Masamitsu Sone, and Ren Shimamoto for their critical readings of the manuscript, and Katsunori Semi for bioinformatics advice.  ... 
doi:10.1016/j.stemcr.2015.02.004 pmid:25772473 pmcid:PMC4400650 fatcat:deaznngucjaf7htr5o5k7jqaxy

Fast Multiplier Methods to Optimize Non-exhaustive, Overlapping Clustering

Yangyang Hou, Joyce Jiyoung Whang, David F. Gleich, Inderjit S. Dhillon
2016 Proceedings of the 2016 SIAM International Conference on Data Mining  
However, in real-world datasets, the clusters may overlap with each other. Furthermore, often, there are outliers that should not belong to any cluster.  ...  For the proximal augmented Lagrangian or proximal method of multipliers, we show a convergence result for the non-convex case with bound-constrained subproblems.  ...  We also compare the results with other stateof-the-art overlapping clustering methods, MOC [3] , ESA [15] , and OKM [8] .  ... 
doi:10.1137/1.9781611974348.34 dblp:conf/sdm/HouWGD16 fatcat:72issb6yzzd3liylse2droux5y

Fast Multiplier Methods to Optimize Non-exhaustive, Overlapping Clustering [article]

Yangyang Hou, Joyce Jiyoung Whang, David F. Gleich, Inderjit S. Dhillon
2016 arXiv   pre-print
However, in real-world datasets, the clusters may overlap with each other. Furthermore, often, there are outliers that should not belong to any cluster.  ...  For the proximal augmented Lagrangian or proximal method of multipliers, we show a convergence result for the non-convex case with bound-constrained subproblems.  ...  We also compare the results with other stateof-the-art overlapping clustering methods, MOC [3] , ESA [15] , and OKM [8] .  ... 
arXiv:1602.01910v1 fatcat:mqu6q7jnb5cbphv7tqshwy6544

Mcoke: Multi-Cluster Overlapping K-Means Extension Algorithm

Said Baadel, Fadi Thabtah, Joan Lu
2015 Zenodo  
The algorithm is different from fuzzy clustering techniques because objects that overlap are assigned a membership value of 1 (one) as opposed to a fuzzy membership degree.  ...  Clustering involves the partitioning of n objects into k clusters. Many clustering algorithms use hard-partitioning techniques where each object is assigned to one cluster.  ...  The Overlapping K-means (OKM) [11] has a similar threshold to determine the belonging of an object.  ... 
doi:10.5281/zenodo.1099281 fatcat:sm6tbpqpdjdddocy76w2c5fex4

Tool Oriented Robot Cooperation

Matthias Bartelt, Sven Stumm, Bernd Kuhlenkötter
2014 Procedia CIRP  
Defining paths for robot tools is mainly limited by workspace of the applied robot, yielding to difficulties in layout design and programming, especially in complex cells.  ...  The tool itself is mounted to an adapter, which can be linked to multiple robots allowing a coordinated transfer of the tool between them.  ...  Other possible algorithms for overlapping clustering range from an Overlapping k-means clustering (OKM) over a Restricted-OKM (R-OKM) to fuzzy c-means clustering [2] , and can be differentiated according  ... 
doi:10.1016/j.procir.2014.10.103 fatcat:oztxc62yczhv5j3huf2qb7zt2u

Concurrent binding to DNA and RNA facilitates the pluripotency reprogramming activity of Sox2

2020 Nucleic Acids Research  
Deletion of the RBM does not affect selection of target genes but mitigates binding to pluripotency related transcripts, switches exon usage and impairs the reprogramming of somatic cells to a pluripotent  ...  Sox2 targets RNA via a 60-amino-acid RNA binding motif (RBM) positioned C-terminally of the DNA binding high mobility group (HMG) box.  ...  We thank Dr Calista Keow Leng Ng (Institute of Medical Biology, Singapore) for the kind gift of the pETG20a-Sox1 plasmid.  ... 
doi:10.1093/nar/gkaa067 pmid:32016422 pmcid:PMC7144947 fatcat:j6rauybecbeatczn5rd2jd7su4

A Survey on Image Segmentation Methods using Clustering Techniques

Nameirakpam Dhanachandra, Yambem Jina Chanu
2017 European Journal of Engineering Research and Science  
However, there exits many algorithms and approaches for image segmentation. Clustering is one of the commonly used image segmentation techniques.  ...  In this paper, we have briefly describe some of the clustering techniques and discuss some of the recent works by researchers on these techniques.  ...  They also introduced hybrid method of the k-harmonic means and overlapping k-means algorithm (KHM-OKM). The output of the KHM method is used to initialize the cluster center of the OKM algorithm.  ... 
doi:10.24018/ejers.2017.2.1.237 fatcat:oju4zxe7kba45mss74wkaapkta

Endemic Kaposi's Sarcoma in Human Immunodeficiency Virus Type 1–Seronegative Persons: Demonstration of Retrovirus-Like Particles in Cutaneous Lesions

Klemens Rappersberger, Erwin Tschachler, Eva Zonzits, Reinhard Gillitzer, Angelos Hatzakis, Andreas Kaloterakis, Dean L. Mann, Theresa Popow-Kraupp, Robert J. Biggar, Rudolf Berger, Joannis Stratigos, Klaus Wolff (+1 others)
1990 Journal of Investigative Dermatology  
In 1984, Greek physicians reported on the clustering of cases of Kaposi's sarcoma (KS) on the Peloponnesus peninsula.  ...  : (a) the classical variant, which frequently occurs among elderly men of Jewish Ashkenazi ancestry and usually runs a rather benign course over years [1, 2] ; (b) the endemic African form, which involves  ...  A careful screening (more than 3000 tumor cells examined) for the presence of Weibel-Palade bodies yielded negati results with the exception of two spindle cells each of which contained one single Weibel-Palade  ... 
doi:10.1111/1523-1747.ep12555450 pmid:2170537 fatcat:fzyk5cseyzd7zk5myvhkermiyu

An Alternative Splicing Switch Regulates Embryonic Stem Cell Pluripotency and Reprogramming

Mathieu Gabut, Payman Samavarchi-Tehrani, Xinchen Wang, Valentina Slobodeniuc, Dave O'Hanlon, Hoon-Ki Sung, Manuel Alvarez, Shaheynoor Talukder, Qun Pan, Esteban O. Mazzoni, Stephane Nedelec, Hynek Wichterle (+6 others)
2011 Cell  
These results reveal a pivotal role for an AS event in the regulation of pluripotency through the control of critical ESC-specific transcriptional programs.  ...  We show that the ESC-specific isoform of FOXP1 stimulates the expression of transcription factor genes required for pluripotency, including OCT4, NANOG, NR5A2, and GDF3, while concomitantly repressing  ...  Sequences of probes with E scores > 0.45 in at least one of the two repeat experiments were clustered to derive consensus binding sites.  ... 
doi:10.1016/j.cell.2011.08.023 pmid:21924763 fatcat:4blnsqapwnfjhacjwc7sjzv6xy

Looking into the Black Box: Insights into the Mechanisms of Somatic Cell Reprogramming

Laurent David, Payman Samavarchi-Tehrani, Azadeh Golipour, Jeffrey L. Wrana
2011 Genes  
The dramatic discovery that somatic cells could be reprogrammed to induced pluripotent stem cells (iPSCs), by the expression of just four factors, has opened new opportunities for regenerative medicine  ...  We will focus on the implications of this work in the construction of a mechanistic understanding of reprogramming and discuss unexplored areas in this rapidly expanding field.  ...  We would like to thank Tobias Beyer for critical review of the manuscript. This work was supported by funds from CIHR (J.L.W.) and the Canadian Stem Cell Network (J.L.W.).  ... 
doi:10.3390/genes2010081 pmid:24710139 pmcid:PMC3924844 fatcat:z4kcu5hlhfcnvj2t73jr5cwuma

Promysalin, a Salicylate-Containing Pseudomonas putida Antibiotic, Promotes Surface Colonization and Selectively Targets Other Pseudomonas

Wen Li, Paulina Estrada-de los Santos, Sandra Matthijs, Guan-Lin Xie, Roger Busson, Pierre Cornelis, Jef Rozenski, René De Mot
2011 Chemistry and Biology  
In addition to enzymes for salicylic acid synthesis and activation, the biosynthetic gene cluster encodes divergent type II fatty acid biosynthesis components, unusual fatty acid-tailoring enzymes (two  ...  Identification of biosynthetic intermediates enabled to propose a pathway for synthesis of this bacterial colonization factor.  ...  The authors thank Sarah Denayer and Hassan Rokni-Zadeh for antagonism assays with P. aeruginosa and P. savastanoi, respectively, and Wesley Mattheus for advice on construction of unmarked deletion mutants  ... 
doi:10.1016/j.chembiol.2011.08.006 pmid:22035801 fatcat:i2bwzre5ujfi5i35uyxcrhh57e

The Antimicrobial Compound Xantholysin Defines a New Group of Pseudomonas Cyclic Lipopeptides

Wen Li, Hassan Rokni-Zadeh, Matthias De Vleeschouwer, Maarten G. K. Ghequire, Davy Sinnaeve, Guan-Lin Xie, Jef Rozenski, Annemieke Madder, José C. Martins, René De Mot, Yung-Fu Chang
2013 PLoS ONE  
of isoleucine) account for the production of the minor structural variants xantholysin C and B, respectively.  ...  Relaxed fatty acid specificity during lipoinitiation by XtlA (acylation with 3hydroxydodec-5-enoate instead of 3-hydroxydecanoate) and for incorporation of the ultimate amino acid by XtlC (valine instead  ...  Acknowledgments The authors wish to thank M. Höfte and J. Xu (Laboratory of Phytopathology, Ghent University, Belgium) for assistance in testing xantholysin sensitivity of Xanthomonas oryzae strains.  ... 
doi:10.1371/journal.pone.0062946 pmid:23690965 pmcid:PMC3656897 fatcat:itbehguzlncl3k5kp5xkna24sy

Active Stacking for Heart Rate Estimation [article]

Dongrui Wu and Feifei Liu and Chengyu Liu
2019 arXiv   pre-print
Heart rate estimation from electrocardiogram signals is very important for the early detection of cardiovascular diseases.  ...  Ensemble regression, which aggregates the outputs of multiple base estimators for more reliable and stable estimates, can be used to remedy this problem.  ...  Acknowledgement This research was supported by the National Natural Science Foundation of China Grants 61873321 and 81871444.  ... 
arXiv:1903.10862v1 fatcat:z4fq2tdupjgyjbe3ktendz3vau
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