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Tripal v1.1: a standards-based toolkit for construction of online genetic and genomic databases
2013
Database: The Journal of Biological Databases and Curation
Preserved Fulltext
Here a site developer can change the viewable name for a field, the table on which a field can join and set sort, field and filter handlers. ...
Conflict of interest. None declared.
Page 17 of 18 ...
Tripal is an open-source, freely available, standards-based toolkit for storage, integration and dissemination of biological data. ...
doi:10.1093/database/bat075
pmid:24163125
pmcid:PMC3808541
fatcat:khwlk7dc6zadpntbze5xskz7um
Wheatgene: a genomics database for common wheat and its related species
2021
Crop Journal
Preserved Fulltext
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Recent advances in sequencing technology and genome assembly strategies allow the acquisition of multiple wheat genomes, calling for a centralized database to store, manage and query the genomics information ...
WheatGene was developed with Drupal, a popular content management system and the toolkit Tripal managed the biological information. ...
Acknowledgments
Appendix A. Supplementary data Supplementary data for this article can be found online at http://doi.org/10.1016/j.cj.2020.xx.xxx. ...
doi:10.1016/j.cj.2021.04.011
fatcat:vldc7glrmbdtviscpafkdcgx2e
The United States Swine Pathogen Database: integrating veterinary diagnostic laboratory sequence data to monitor emerging pathogens of swine
[article]
2021
bioRxiv
pre-print
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We implemented the Tripal toolkit, using the open source Drupal content management system and the Chado database schema. ...
Users can download annotated genomic sequences from the database using a customized search interface that incorporates data mined from published literature; search for similar sequences using BLAST-based ...
Mol Biol Evol, 37, , L.A., Ficklin, S.P., Cheng, C.H., Jung, S., Feltus, F.A., Bett, K.E. and 544 Main, D. (2013) Tripal v1.1: a standards-based toolkit for construction of online 545 genetic and genomic ...
doi:10.1101/2021.04.16.439882
fatcat:4rqkegysqbc2jm5ydkzni2yacq
AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture
2018
Database: The Journal of Biological Databases and Curation
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AgBioData (https://www.agbiodata.org) is a consortium of people working at agricultural biological databases, data archives and knowledgbases who strive to identify common issues in database development ...
Database URL: https://www.agbiodata.org CMO http://obofoundry.org/ontology/cmo.html Crop Ontology a collection of vocabularies that describe breeders' traits for agriculturally important plants: banana ...
Acknowledgements We acknowledge with thanks The National Science Foundation Plant Genome Research Program Award # 1444573 for funding the AgBioData Workshop and development and hosting of the AgBio-Data ...
doi:10.1093/database/bay088
pmid:30239679
pmcid:PMC6146126
fatcat:spcxmd66qrgdnos4larqfvf6ai