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3D medical volume reconstruction using web services

Rob Kooper, Andrew Shirk, Sang-Chul Lee, Amy Lin, Robert Folberg, Peter Bajcsy
2008 Computers in Biology and Medicine  
The prototype system has been used for multiple 3D volume reconstructions of blood vessels and vasculogenic mimicry patterns in histological sections of uveal melanoma studied by fluorescent confocal laser  ...  We address the problem of 3D medical volume reconstruction using web services.  ...  Acknowledgement This material is based upon work partially supported by the National Laboratory for Advanced Data Research (NLADR) and the National Institute of Health under Grant No. R01 EY10457.  ... 
doi:10.1016/j.compbiomed.2008.01.015 pmid:18336808 pmcid:PMC2279302 fatcat:e2fummfx7baetjqptglzonxdva

3D medical volume reconstruction using Web services

R. Kooper, A. Shirk, S.-C. Lee, A. Lin, R. Folberg, P. Bajcsy
2005 IEEE International Conference on Web Services (ICWS'05)  
We address the problem of 3D medical volume reconstruction using web services.  ...  This paper presents 3D volume reconstruction problem requirements, architecture of the developed prototype system and the tradeoffs of our system design.  ...  Acknowledgement This material is based upon work partially supported by the National Laboratory for Advanced Data Research (NLADR) and the National Institute of Health under Grant No. R01 EY10457.  ... 
doi:10.1109/icws.2005.1 dblp:conf/icws/KooperSLLFB05 fatcat:uibzg6kl2vanrfj7bafaod2qra

Lossless Compression of Multi-View Cultural Heritage Image Data

Max Von Buelow, Stefan Guthe, Martin Ritz, Pedro Santos, Dieter W. Fellner
2019 Eurographics Workshop on Graphics and Cultural Heritage  
In this paper, we present a lossless image compression approach for multi-view and material reconstruction datasets with a strong focus on data created from cultural heritage digitalization.  ...  As the images tend to consume immense amounts of storage, compression is essential for long time archiving.  ...  Preliminaries Cultural heritage image data usually consists of a set of images and their camera and light parameters.  ... 
doi:10.2312/gch.20191343 dblp:conf/vast/BulowGRSF19 fatcat:uhajis3yardhxnszjy463vozqm

PLUS: Open-Source Toolkit for Ultrasound-Guided Intervention Systems

Andras Lasso, Tamas Heffter, Adam Rankin, Csaba Pinter, Tamas Ungi, Gabor Fichtinger
2014 IEEE Transactions on Biomedical Engineering  
PLUS provides a variety of methods for interventional tool pose and ultrasound image acquisition from a wide range of tracking and imaging devices, spatial and temporal calibration, volume reconstruction  ...  , data processing algorithms, and visualization software.  ...  Acknowledgments The authors wish to thank the students and staff engineers at Queen's University, University of British Columbia, and Robarts Research Institute for their contribution to the toolkit.  ... 
doi:10.1109/tbme.2014.2322864 pmid:24833412 pmcid:PMC4437531 fatcat:6xa7pimevbaarebxbza3kzqzvy

Deep Learned Quantization-Based Codec for 3D Airborne LiDAR Point Cloud Images

A. Christoper Tamilmathi, P. L. Chithra
2021 Frontiers in Robotics and AI  
This paper introduces a novel deep learned quantization-based coding for 3D Airborne LiDAR (Light detection and ranging) point cloud (pcd) image (DLQCPCD).  ...  The experimental results show that the proposed model compresses every pcd image into constant 16 Number of Neurons of data and decompresses the image with approximately 160 dB of PSNR value, 174.46 s  ...  The combination of plane fitting and discrete wavelet transform algorithm improves the quality of the reconstructed pcd image (Chithra and Christoper 2018) .  ... 
doi:10.3389/frobt.2021.606770 pmid:34055900 pmcid:PMC8155491 fatcat:chco7wr3efegbpra6hw6fnu3tm

An Effective Method for e-Medical Data Compression Using Wavelet Analysis

Ibrahim Abdulai Sawaneh
2018 International Journal of Medical Imaging  
The continuous utilization of massive patient data via telecommunication medium is raising a concern either in data transmission speed, storage, security and privacy.  ...  Several compression methods were applied and Discrete Cosine Transform (DCT) proved to have a superior compression ratio as opposed to Discrete Wavelet Transform (DWT).  ...  Acknowledgements Thanks and appreciation goes to a Thesis title "DWT Based Image Compression for Health Systems" written by (Sawaneh, 2017) .  ... 
doi:10.11648/j.ijmi.20180603.12 fatcat:ofqvi7crjjayrdtffmozn5br2q

Three-dimensional Coherent X-ray Diffraction Imaging via Deep Convolutional Neural Networks [article]

Longlong Wu, Shinjae Yoo, Ana F. Suzana, Tadesse A. Assefa, Jiecheng Diao, Ross J. Harder, Wonsuk Cha, Ian K. Robinson
2021 arXiv   pre-print
Despite meeting all the oversampling requirements of Sayre and Shannon, current phase retrieval approaches still have trouble achieving a unique inversion of experimental data in the presence of noise.  ...  As a critical component of coherent X-ray diffraction imaging (CDI), phase retrieval has been extensively applied in X-ray structural science to recover the 3D morphological information inside measured  ...  ( ) is proportional to the modulus squared of the Fourier Transform of a complex field ( ): ( ) = |∫ ( ) ⋅ | 2 , (1) where = − , and = f − i is the momentum transfer defined by the incident and diffracted  ... 
arXiv:2103.00001v3 fatcat:dmef24ainvcxtegs4qzonnibyy

Algorithm and Architecture Optimization for 2D Discrete Fourier Transforms with Simultaneous Edge Artifact Removal

Faisal Mahmood, Märt Toots, Lars-Göran Öfverstedt, Ulf Skoglund
2018 International Journal of Reconfigurable Computing  
Two-dimensional discrete Fourier transform (DFT) is an extensively used and computationally intensive algorithm, with a plethora of applications. 2D images are, in general, nonperiodic but are assumed  ...  We also used our high-performance 2D FFT implementation to accelerate filtered back-projection for reconstructing tomographic data.  ...  Aird for language assistance and Shizuka Kuda for logistical arrangements.  ... 
doi:10.1155/2018/1403181 fatcat:d35dudlaire7noh5eginccozha

Sonic Millip3De: A massively parallel 3D-stacked accelerator for 3D ultrasound

R. Sampson, Ming Yang, Siyuan Wei, C. Chakrabarti, T. F. Wenisch
2013 2013 IEEE 19th International Symposium on High Performance Computer Architecture (HPCA)  
Three-dimensional (3D) ultrasound is becoming common for non-invasive medical imaging because of its high accuracy, safety, and ease of use.  ...  We describe the Sonic Millip3De, a new system architecture and accelerator for 3D ultrasound beamformation-the most computationally intensive aspect of image formation.  ...  Brian Fowlkes, Oliver Kripfgans, and Paul Carson for feedback and assistance with image quality analysis and Ron Dreslinski for assistance with SPICE.  ... 
doi:10.1109/hpca.2013.6522329 dblp:conf/hpca/SampsonYWCW13 fatcat:ddad4ejlsbfg5l47bksjzltqyi

Software Platform for European XFEL: Towards Online Experimental Data Analysis

S. A. Bobkov, A. B. Teslyuk, S. I. Zolotarev, M. Rose, K. A. Ikonnikova, V. E. Velikhov, I. A. Vartanyants, V. A. Ilyin
2018 Lobachevskii Journal of Mathematics  
vrge mount of dt eing generted t lrge sle filities like iuropen Ery preeEiletron vser @pivA requires new pprohes for dt proessing nd nlysisF yne of the most omputtionlly hllenging experiments t n piv is  ...  singleEprtile struture determintionF sn this pper we propose new design for n integrted softwre pltform whih omines wellEestlished tehniques for piv dt nlysis with righ erformne ht enlysis @rheA methodsF  ...  This work has been carried out using computing resources of the federal collective usage center Complex for Simulation and Data Processing for Mega-science Facilities at NRC "Kurchatov Institute" (ministry  ... 
doi:10.1134/s1995080218090093 fatcat:wqt672giwbcf3lvp2qybo2pl5m

Grid-enabling medical image analysis

C. Germain, V. Breton, P. Clarysse, Y. Gaudeau, T. Glatard, E. Jeannot, Y. Legre, C. Loomis, J. Montagnat, J.-M. Moureaux, A. Osorio, X. Pennec (+1 others)
2005 CCGrid 2005. IEEE International Symposium on Cluster Computing and the Grid, 2005.  
Digital medical image processing is a promising application area for grids.  ...  Grids have emerged as a promising technology to handle the data and compute intensive requirements of many application areas.  ...  The three components of these protocols are compression algorithms, coupling compression and transfer, and finally optimization targeting medical image exploration.  ... 
doi:10.1109/ccgrid.2005.1558593 dblp:conf/ccgrid/GermainBCGGJLLMMOPT05 fatcat:qzmpszc4rbgxrikmpng5ajqlfi

Grid-enabling medical image analysis

C. Germain, V. Breton, P. Clarysse, Y. Gaudeau, T. Glatard, E. Jeannot, Y Legré, C. Loomis, I. Magnin, J. Montagnat, J. -M. Moureaux, A. Osorio (+2 others)
2005 Journal of clinical monitoring and computing  
The three components of these protocols are compression algorithms, coupling compression and transfer, and finally optimization targeting medical image exploration.  ...  It is a generalpurpose user-level and portable algorithm suited not only for grid computing but also for any data transfer application.  ... 
doi:10.1007/s10877-005-0679-9 pmid:16328948 fatcat:7enurzsg6bgcrgx54eg7btzoiq

A review on various Medical Image Compression methods

Ms. Shrutika S. Sawant, Dr. Dharwadkar N.V., Mr. Subodh. S. Ingaleshwar
2016 IJIREEICE  
Even though, the medical image compression has a intense scope in future but it also has lot of difficulties and challenges to achieve requirements of the medical field.  ...  In this paper comparative analysis of different compression techniques and their applications in the rising fields of medical science such as e-health, telemedicine, teleradiology has been carried out.  ...  However, digital imaging generates large amounts of data which need to be compressed, without loss of significant information, to save storage space and allow speedy transfer.  ... 
doi:10.17148/ijireeice.2016.4107 fatcat:g4ovkhnq6fa6lpi5pdtlw2yopu

Mobile phone and cloud — A dream team for 3D reconstruction

Alex Locher, Michael Perdoch, Hayko Riemenschneider, Luc Van Gool
2016 2016 IEEE Winter Conference on Applications of Computer Vision (WACV)  
Recently, Structure-from-Motion pipelines (SfM) for the 3D reconstruction of scenes from images were pushed from desktop computers onto mobile devices, like phones or tablets.  ...  A combination of handheld device with camera, display and full connectivity entails possibilities for an on-line 3D reconstruction that would have been difficult to implement otherwise.  ...  With the advent of 3D cinema, 3D TV, 3D printing, and cheaper or even free 3D modeling technologies, demand for 3D data production and consumption is rising.  ... 
doi:10.1109/wacv.2016.7477629 dblp:conf/wacv/LocherPRG16 fatcat:bxvsqnlizjfmzmtzzbt2o37ob4

Multimodal Image Registration for Efficient Multi-resolution Visualization [chapter]

Joerg Meyer
2008 Mathematics and Visualization  
Efficient storage and processing of multimodal images as well as histogram transformation and registration will be discussed.  ...  and rendering of image data from structural and functional medical imaging sources.  ...  storage and transmission; and 3D-texture-based, multi-resolution volume rendering for interactive visualization.  ... 
doi:10.1007/978-3-540-72630-2_8 fatcat:6u2mldbqmjevzav6rdupi5uxfy
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