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Towards Implementation of OMOP in a German University Hospital Consortium
2018
Applied Clinical Informatics
Objective To realize an OMOP/OHDSI-based pilot implementation within a consortium of eight German university hospitals, evaluate the applicability to support data harmonization and sharing among them, ...
Conclusion OMOP/OHDSI is a viable open source solution for data integration in a German research consortium. ...
The authors were able to successfully implement this tools stack for the first time in a German consortium of university hospitals based on a typical dataset, although in a German flavor due to the coding ...
doi:10.1055/s-0037-1617452
pmid:29365340
pmcid:PMC5801887
fatcat:ttodzt7t5rdh7mwzfhz7526g4u
Moving Towards an EHR Data Quality Framework: The MIRACUM Approach
2019
Studies in Health Technology and Informatics
DQ issues can now be systematically identified by individual hospitals to subsequently implement site- or consortium-wide feedback loops to increase data quality. ...
Data quality (DQ) is an important prerequisite for secondary use of electronic health record (EHR) data in clinical research, particularly with regards to progressing towards a learning health system, ...
Acknowledgement This work was funded in part by the German Federal Ministry of Education and Research (BMBF) within the Medical Informatics Initiative (MIRACUM Consortium) under the Funding Numbers FKZ ...
doi:10.3233/shti190834
pmid:31483279
fatcat:bjh5e5s6tfh2ddx3pxh3fvsuna
KETOS: Clinical decision support and machine learning as a service – A training and deployment platform based on Docker, OMOP-CDM, and FHIR Web Services
2019
PLoS ONE
The KETOS platform demonstrated in this work implements a tool for researchers allowing them to perform statistical analyses and deploy resulting models in a secure environment. ...
To take full advantage of decision support, machine learning, and patient-level prediction models, it is important that models are not only created, but also deployed in a clinical setting. ...
Acknowledgments The present work was performed in fulfilment of the requirements for obtaining the degree "Dr. rer. biol. hum." from the Friedrich-Alexander-Universität Erlangen-Nürnberg (JG). ...
doi:10.1371/journal.pone.0223010
pmid:31581246
pmcid:PMC6776354
fatcat:edsluvqr7vbmlmse47fyxxkeue
MIRACUM: Medical Informatics in Research and Care in University Medicine
2018
Methods of Information in Medicine
OHDSI, PCORnet, eMerge, RD-Connect) MIRACUM is a consortium of academic and hospital partners as well as one industrial partner in eight German cities which have joined forces to create interoperable data ...
Health System will be crucial for the acceptance and sustainability in the medical community and the MIRACUM university hospitals. ...
Acknowledgment We are grateful to the many members of the MIRACUM team who have actively participated in the design and first implementation of the described architecture and data integration centers. ...
doi:10.3414/me17-02-0025
pmid:30016814
pmcid:PMC6178200
fatcat:5vgcr2psinbbdgkolpsdapqxee
Digital networks for laboratory data: potentials, barriers and current initiatives
2018
Clinical Chemistry and Laboratory Medicine
The German Medical Informatics Initiative is presented as a current undertaking that strives to address these issues by establishing a national infrastructure for the secondary use of routine clinical ...
Integration of these data sources opens up several potentials: a longitudinal view of laboratory findings would close the gaps between individual provider visits and allow to more closely follow disease ...
With 10 participating university hospitals and access to data from 12 million patients, MIRACUM is currently the largest MII consortium. ...
doi:10.1515/cclm-2018-1131
pmid:30496134
fatcat:w4gjgsjmyvepth7qxyyynre5z4
A Generic Method and Implementation to Evaluate and Improve Data Quality in Distributed Research Networks
2019
Methods of Information in Medicine
A reference implementation for this concept has been successfully utilized at 10 sites across the German Cancer Consortium. ...
To achieve this, we designed a quality report and the process for generating such a report. The final step was the implementation in a German research network. ...
Acknowledgments The authors would like to acknowledge the valuable collaboration with their partners in the German Cancer Consortium (DKTK), in particular Barbara Uhl and Kristina Ihrig of the Office of ...
doi:10.1055/s-0039-1693685
pmid:31514209
fatcat:pjy5jtlwgvb4bobjn2algrwlzq
D8.2 Overview Document on Already Existing Data Harmonisation Tools
2016
Zenodo
This review has been done as a deliverable of the Biobanking and Biomolecular Resources Research Infrastructure – European Research Infrastructure Consortium (BBMRI-ERIC) Common Service IT (CS-IT) as well ...
Since data harmonisation, however, is not only an important issue in biobanking, but a key component in all data sharing/data projects, our focus is also on such projects outside the biobanking area. ...
This may be a first step toward a larger distributed network of data archiving and dissemination services. ...
doi:10.5281/zenodo.165775
fatcat:gv3654h5ondpri6hbuo2hdppeq
First Steps to Evaluate an NLP Tool's Medication Extraction Accuracy from Discharge Letters
[chapter]
2021
Studies in Health Technology and Informatics
Methods: Ten randomly selected discharge letters were extracted from the data warehouse of the University Hospital Erlangen (UHE) and manually annotated to create a gold standard. ...
Discussion: This proof-of-concept study is a first step towards an automated scalable evaluation system for MIRACUM's industry partner's NLP tool by using a gold standard. ...
Acknowledgements: This work was funded in part by the German Federal Ministry of Education and Research (BMBF) within the Medical Informatics Initiative (MIRACUM Consortium) under the Funding Number FKZ ...
doi:10.3233/shti210073
pmid:34042898
fatcat:cywxg5b4wrcbxbcbejcxcjut7m
The French Health Data Hub and the German Medical Informatics Initiatives: Two National Projects to Promote Data Sharing in Healthcare
2019
IMIA Yearbook of Medical Informatics
The MII project is based on a bottom-up approach and relies on four consortia including academic hospitals, universities, and private partners. ...
A Franco-German cooperation, extended to other countries of the European Union with similar initiatives, should allow sharing and strengthening efforts in a strategic area where competition from other ...
University hospitals in the West of France have built one of the first clinical data research network in Europe [47] , which is very similar to a consortia of the German project. ...
doi:10.1055/s-0039-1677917
pmid:31419832
pmcid:PMC6697511
fatcat:dy4xn2kdpbf4nckd77djv72hpa
EOSC-Life Report on data standards for observational and interventional studies, and interoperability between healthcare and research data
2021
Zenodo
A conclusion summarises the report's findings and discusses possible actions to improve data interoperability in the short, medium and long term. ...
The practicalities of interoperability, in particular with respect to making healthcare data more like interventional research data, are explored – again under the headings of outcome measures, syntactic ...
Furthermore, OMOP is not limited to hospital data. A web page describing the mapping of a biobank's data to OMOP (at UCL in London) is available at [95] . ...
doi:10.5281/zenodo.5810611
fatcat:e5of54ape5bvdbv2erihu6dexi
International electronic health record-derived COVID-19 clinical course profiles: the 4CE consortium
2020
npj Digital Medicine
To do this, we formed an international consortium (4CE) of 96 hospitals across five countries (www.covidclinical.net). ...
Laboratory tests at the time of diagnosis showed hospital-level differences equivalent to country-level variation across the consortium partners. ...
Hospitals in Italy, in contrast, did not see a dramatic rise in creatinine in their hospitalized population, while the small percentage of French and German patients remaining in the hospital for 2 weeks ...
doi:10.1038/s41746-020-00308-0
pmid:32864472
pmcid:PMC7438496
fatcat:kfanlgxygfaxhghsmadytwgmea
International Electronic Health Record-Derived COVID-19 Clinical Course Profile: The 4CE Consortium
[article]
2020
medRxiv
pre-print
METHODS: A consortium of international hospital systems of different sizes utilizing Informatics for Integrating Biology and the Bedside (i2b2) and Observational Medical Outcomes Partnership (OMOP) platforms ...
RESULTS: 96 hospitals in the US, France, Italy, Germany, and Singapore contributed data to the consortium for a total of 27,927 COVID-19 cases and 187,802 performed laboratory values. ...
Hospitals in Italy, in contrast, did not see a dramatic rise in creatinine in their hospitalized population, while the small percentage of French and German patients remaining in the hospital for two weeks ...
doi:10.1101/2020.04.13.20059691
fatcat:3fnicc3ayncdnozy7tgvbcp2di
Information Technology for Clinical, Translational and Comparative Effectiveness Research
2015
IMIA Yearbook of Medical Informatics
Acknowledgement We would like to acknowledge the support of Martina Hutter and the reviewers in the selection process of the IMIA Yearbook. ...
The authors selected five sites from a portfolio of German University Hospitals runing EHR implementations and evaluated within these sites the existence of modules or tools, which can readily be applied ...
The authors analysed in five sites' hospital information system environments in Germany the possibility of implementing a patient recruitment process and provided recommendations for the development of ...
doi:10.15265/iy-2015-030
pmid:26293866
pmcid:PMC4587062
fatcat:xhhh6mfzdnbr3lr43hjinrwtge
B1MG D3.7 - Documented best practices in sharing and linking phenotypic and genetic data - 1v0
2021
Zenodo
This is the first version of documented best practices in sharing and linking phenotypic and genetic data. ...
It identifies and describes best practices on sharing and linking phenotypic and genetic data in both the healthcare sector and in the research setting. ...
Documented best practices in sharing and linking phenotypic and genetic dataChampion: Medical Informatics Hospital Clínic-University of Barcelona; Doce de Octubre University Hospital, Madrid, Telemedicine ...
doi:10.5281/zenodo.5018520
fatcat:5riuzciexnbypgdvmeumdxvyim
B1MG D3.7 - Documented best practices in sharing and linking phenotypic and genetic data - 1v0
2021
Zenodo
This is the first version of documented best practices in sharing and linking phenotypic and genetic data. ...
It identifies and describes best practices on sharing and linking phenotypic and genetic data in both the healthcare sector and in the research setting. ...
sharing and linking phenotypic and
genetic data -1v0
19
Champion: Medical Informatics Hospital Clínic-University of
Barcelona; Doce de Octubre University Hospital, Madrid,
Telemedicine and Information ...
doi:10.5281/zenodo.4819148
fatcat:emq7g3lcinbxjcsqjokjw3ehpa
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