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MULTI-X, a State-of-the-Art Cloud-Based Ecosystem for Biomedical Research
2018
2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)
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This cloud-based framework simplifies the logistical challenges of implementing data analytics and AI solutions by providing pre-configured environments with ad-hoc scalable computing resources and secure ...
Beyond the complexity of executing dataintensive workflows over large-scale distributed data, the reproducibility of computed results is of paramount importance to validate scientific discoveries. ...
Practical mechanisms must be implemented to facilitate the discovery and improve the leverage of these resources. ...
doi:10.1109/bibm.2018.8621317
dblp:conf/bibm/VilaAPF18
fatcat:x3wewucqjfbkvfzp3gfuzv426q
Developing a framework for digital objects in the Big Data to Knowledge (BD2K) commons: Report from the Commons Framework Pilots workshop
2017
Journal of Biomedical Informatics
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While such data hold significant promise for accelerating discovery, their use entails many challenges including: the need for adequate computational infrastructure, secure processes for data sharing and ...
These are just some elements of a complex ecosystem that needs to be built to support the rapid accumulation of these data. ...
facilitate a data ecosystem that will promote new discoveries through data reuse and data integration. ...
doi:10.1016/j.jbi.2017.05.006
pmid:28501646
pmcid:PMC5545976
fatcat:akpykof6sfeehcd2jhegji2pmi
CSE Software Ecosystems: Critical Instruments of Scientific Discovery
2017
Figshare
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Difficulties arise from the confluence of disruptive changes in computing architectures, new opportunities for greatly improved simulation capabilities, and demand for greater scientific reproducibility ...
variety of technical and social issues in scientific software. ...
PETSc: Suite of data structures and routines for the scalable solution of
PDE-based applications. ...
doi:10.6084/m9.figshare.4708543.v2
fatcat:vxh5hbxnobf45h3kgn45ougef4
INTERVENTIONS FOR SCIENTIFIC AND ENTERPRISE APPLICATIONS BASED ON HIGH PERFORMANCE AND CLOUD COMPUTING
2014
International Journal of Research in Engineering and Technology
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of a huge number of computers for executing large scale experiments. ...
As enterprise applications are data centric, user friendly, complex, scalable and often require software packages, decision support systems, warehouse while scientific applications have need of the availability ...
Computational and Data-Driven Sciences are the major pillars of scientific discovery in addition to experimental and theoretical sciences. ...
doi:10.15623/ijret.2014.0301070
fatcat:xxctnysnmfbsrlbgqq52ij7xp4
InterSCity: A Scalable Microservice-based Open Source Platform for Smart Cities
2017
Proceedings of the 6th International Conference on Smart Cities and Green ICT Systems
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Smart City technologies emerge as a potential solution to tackle common problems in large urban centers by using city resources efficiently and providing quality services for citizens. ...
We discuss how the microservice approach enables a flexible, extensible, and loosely coupled architecture and present experimental results demonstrating the scalability of the proposed platform. ...
We also acknowledge the following developers for their contributions to the InterSCity platform source ...
doi:10.5220/0006306200350046
dblp:conf/smartgreens/EsposteKCL17
fatcat:7m6baugi5reqfaean7lghr6gge
A Study of Cloud Computing Based Model to Facilitate Collaborative Research
2015
IJAEDU- International E-Journal of Advances in Education
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Cloud computing in Collaborative research can facilitate (a) Combined efforts of many good researchers for excellent outcomes, (b) Creativity, (c) Sharing experience of all researchers, (d) Get funding ...
An attempt is made to explore the possible solutions to facilitate collaborative research with the help of Cloud computing technology in order to make certain vital observations to lay down conclusion. ...
number of factors have contributed to a trend towards increased collaboration. ...
doi:10.18768/ijaedu.11531
fatcat:squm2e2lejcm3ppr7dqkeomb7a
DataFed: Towards Reproducible Research via Federated Data Management
[article]
2020
arXiv
pre-print
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The increasingly collaborative, globalized nature of scientific research combined with the need to share data and the explosion in data volumes present an urgent need for a scientific data management system ...
DataFed represents a step towards reproducible scientific research by enabling reliable staging of the correct data at the desired environment. ...
and collaborative research, and facilitate data-driven scientific discovery. ...
arXiv:2004.03710v1
fatcat:y645uounzbcq3bdkkalrtqrdzm
Opportunities and Challenges in Running Scientific Workflows on the Cloud
2011
2011 International Conference on Cyber-Enabled Distributed Computing and Knowledge Discovery
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We coin the term "Cloud Workflow", to refer to the specification, execution, provenance tracking of large-scale scientific workflows, as well as the management of data and computing resources to enable ...
Cloud computing; Scientific Workflow; Cloud workflow; Data Intensive Computing I. ...
Scalability would be top concern for implementation of such a model. ...
doi:10.1109/cyberc.2011.80
dblp:conf/cyberc/ZhaoFRL11
fatcat:zlpe7p73lnh2jksgtnstvkafn4
OUP accepted manuscript
2017
Briefings in Bioinformatics
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We untangle the parameters for selecting a preferable solution for bioinformatics research with Md. ...
Rezaul Karim is a PhD researcher at Semantics in eHealth and Life Sciences with expertise in the development of computational resources for the analysis and visualization of ribosome profiling (RiboSeq ...
and João Bosco Jares for helping them in drawing the Figure 2 . ...
doi:10.1093/bib/bbx039
pmid:28419324
pmcid:PMC6169675
fatcat:xsdfepwqmnb7pgkmnep2ifn2wi
Architecture-aware Algorithms and Software for Peta and Exascale Computing
2011
2011 IEEE International Parallel & Distributed Processing Symposium
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• Future architectures targeted toward good HPL
performance will not be a good match for most
applications. ...
anticipated.ØFacilitating mathematical optimization and uncertainty quantification for exascale discovery, design, and decision making.9. ...
Interconnect technology: § Increasing the performance and energy efficiency of data movement. ...
doi:10.1109/ipdps.2011.419
dblp:conf/ipps/Dongarra11
fatcat:3minwqg5ojbaxnhgi5c3rv53g4
Towards A Methodology and Framework for Workflow-Driven Team Science
[article]
2019
arXiv
pre-print
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Scientific workflows are powerful tools for management of scalable experiments, often composed of complex tasks running on distributed resources. ...
We also present a conceptual design towards the development of methodologies and tools for effective workflow-driven collaborations, namely the PPoDS methodology and the SmartFlows Toolkit for smart utilization ...
The authors would also like to thank Workflows for Data Science (WorDS) Center of Excellence team members Mai Nguyen and Volkan Vural for their participation in the discussions leading to this paper. ...
arXiv:1903.01403v1
fatcat:ubbe6qk5kfb77erhetvp25jele
Toward Interoperable Cyberinfrastructure: Common Descriptions for Computational Resources and Applications
2020
Practice and Experience in Advanced Research Computing
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2021 pre-print arXiv:2107.00417v1 fatcat:7yt6bvjexjfepbtp7frzvi3gm4
We sketch a solution to the problem of a common description and catalog of resources: we describe an approach to implementing a resource registry for use by the community and discuss potential approaches ...
The user-facing components of the Cyberinfrastructure (CI) ecosystem, science gateways and scientific workflow systems, share a common need of interfacing with physical resources (storage systems and execution ...
While we ultimately strive for interoperability at the scientific application level, finding a solution for uniform resources is a necessary precursor. ...
doi:10.1145/3311790.3400848
dblp:conf/xsede/StubbsM0KCDPZ20
fatcat:miwvy4mecfflpcpreoldu3kwle
Towards a Scalable Architecture for Smart Villages: The Discovery Phase
2020
Sustainability
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The spread and quantum of this daunting challenge calls for a scalable solution.The aim of the 'Scalable Architecture for Smart Villages' project is to contribute to an eective solutionwhich addresses ...
In this paper we outline the discoveryphase, which will lay the foundation for developing our framework of scalable smart villages.The Discovery Phase is a research process where the community learns about ...
Conflicts of Interest: The authors declare no conflict of interest, the funders had no role in the design of the study, in the collection, analyses, or interpretation of data, in the writing of the manuscript ...
doi:10.3390/su12187580
fatcat:2rdqz6obqbg2jpg3hxbpdjhlka
Knowledge generation using satellite earth observations to support sustainable development goals (SDG): A use case on Land degradation
2020
International Journal of Applied Earth Observation and Geoinformation
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The authors would like to thank the Swiss Federal Office for the Environment (FOEN) for their financial support to the Swiss Data Cube. ...
of Zurich and the Swiss Federal Institute for Forest, Snow and Landscape Research WSL. ...
Harmonized discovery of and access to heterogeneous resources (e.g. data) from different systems • Publication of scientific workflows connecting data and models • Execution of scientific workflows based ...
doi:10.1016/j.jag.2020.102068
fatcat:qj5tinajovcybjg4cl5akxgfre
A Seeded Cloud Approach to Health Cyberinfrastructure: Preliminary Architecture Design and Case Applications
2012
2012 45th Hawaii International Conference on System Sciences
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The expected volume of information and users -including many with only basic skills in data handling and analysis of such systems -also demands an elastic solution. ...
Applications in public health and health services require access to a range of heterogeneous data, from environmental information in a region, to population-level data across regions, to more closely held ...
Thank you to the reviewers for their suggestions that helped to make this a stronger paper.
References ...
doi:10.1109/hicss.2012.82
dblp:conf/hicss/BaruBHPF12
fatcat:oxtrpgsx2vgapne3g4pmuoeshm
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