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TopoFilter: a MATLAB package for mechanistic model identification in systems biology

Mikołaj Rybiński, Simon Möller, Mikael Sunnåker, Claude Lormeau, Jörg Stelling
2020 BMC Bioinformatics  
in systems biology.  ...  To develop mechanistic dynamic models in systems biology, one often needs to identify all (or minimal) representations of the biological processes that are consistent with experimental data, out of a potentially  ...  Acknowledgements We thank Thomas Liphardt for discussions and benchmarks, Moritz Lang for suggesting the ligand-stimulated reporter example, and Eve Tasiudi for comments on the manuscript.  ... 
doi:10.1186/s12859-020-3343-y pmid:31996136 pmcid:PMC6990465 fatcat:dbv6vivovfcdne3xplksfzgz3q