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jicbioimage: a tool for automated and reproducible bioimage analysis

Tjelvar S. G. Olsson, Matthew Hartley
<span title="2016-11-15">2016</span> <i title="PeerJ"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/eyfkjqp7sva5bbnwatk5zazi7q" style="color: black;">PeerJ</a> </i> &nbsp;
.2674 5/16 Olsson and Hartley (2016) , PeerJ, DOI 10.7717/peerj.2674 6/16 Olsson and Hartley (2016) , PeerJ, DOI 10.7717/peerj.2674 8/16 Olsson and Hartley (2016) , PeerJ, DOI 10.7717/peerj  ...  .2674 9/16 Olsson and Hartley(2016), PeerJ, DOI 10.7717/peerj.2674 14/16  ...  Competing Interests Author Contributions Tjelvar S. G.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.7717/peerj.2674">doi:10.7717/peerj.2674</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/27896026">pmid:27896026</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC5119319/">pmcid:PMC5119319</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/7vidgadyinee3pomshq4jc6m7a">fatcat:7vidgadyinee3pomshq4jc6m7a</a> </span>
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A method for detecting single mRNA molecules in Arabidopsis thaliana

Susan Duncan, Tjelvar S. G. Olsson, Matthew Hartley, Caroline Dean, Stefanie Rosa
<span title="2016-08-05">2016</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/r7g2xzafrze7jhzts3tizvsi7e" style="color: black;">Plant Methods</a> </i> &nbsp;
The slide, together with the sample and coverslip, were then submerged briefly in liquid nitrogen (~5 s) to adhere the roots to the slide.  ...  They were stratified for 3 days at 5 °C before being transferred to a growth cabinet (Sanyo MLR-351H) 16 h light, 100 μmol m −2 s −1 , 22 °C ± 1 °C.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/s13007-016-0114-x">doi:10.1186/s13007-016-0114-x</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/28035231">pmid:28035231</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC5192599/">pmcid:PMC5192599</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/c2hk3nwoizcbbjbkmmmvcie2iq">fatcat:c2hk3nwoizcbbjbkmmmvcie2iq</a> </span>
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Extent of enthalpy-entropy compensation in protein-ligand interactions

Tjelvar S. G. Olsson, John E. Ladbury, Will R. Pitt, Mark A. Williams
<span title="2011-08-02">2011</span> <i title="Wiley"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/6bubxfqklvdwthsc43yvjbtjae" style="color: black;">Protein Science</a> </i> &nbsp;
These population cumulative distributions were then used to compute the Kuiper statistic V n for the experimental sample by comparing its cumulative distribution, S n (y) or S n (/), to that appropriate  ...  for an experimental sample of size n, V n ¼ max½S n ðhÞ À PðhÞ þ max½PðhÞ À S n ðhÞ for À p < h < p (6) and similarly for /.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1002/pro.692">doi:10.1002/pro.692</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/21739503">pmid:21739503</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC3190155/">pmcid:PMC3190155</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/al5rimvc2jhpfogclb2olmw2ua">fatcat:al5rimvc2jhpfogclb2olmw2ua</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200210094857/http://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC3190155&amp;blobtype=pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/43/c7/43c70940ef842952e1fec193e76461de3405a711.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1002/pro.692"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> wiley.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3190155" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Local chromatin environment of a Polycomb target gene instructs its own epigenetic inheritance

Scott Berry, Matthew Hartley, Tjelvar S G Olsson, Caroline Dean, Martin Howard
<span title="2015-05-08">2015</span> <i title="eLife Sciences Publications, Ltd"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/en4qj5ijrbf5djxx7p5zzpjyoq" style="color: black;">eLife</a> </i> &nbsp;
Proc Natl Acad Sci U S A. L, Janmaat K, Willemsen V, Linstead P, Poethig S, Roberts K, et al. Cellular 417 organisation of the Arabidopsis thaliana root. Development. 1993 Sep;119(1):71-84.  ...  Membranes were reversibly stained using Ponceau S solution (Sigma-247 Aldrich, P7170).  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.7554/elife.07205">doi:10.7554/elife.07205</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/25955967">pmid:25955967</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC4450441/">pmcid:PMC4450441</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ahia76qwkjdg7itsuuptyay42u">fatcat:ahia76qwkjdg7itsuuptyay42u</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170921192514/https://cdn.elifesciences.org/articles/07205/elife-07205-v1.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/d0/24/d024b52871b8043fb894ec828d99be695bfe2ae9.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.7554/elife.07205"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> elifesciences.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4450441" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Distinct phases of Polycomb silencing to hold epigenetic memory of cold inArabidopsis

Hongchun Yang, Scott Berry, Tjelvar S. G. Olsson, Matthew Hartley, Martin Howard, Caroline Dean
<span title="2017-08-17">2017</span> <i title="American Association for the Advancement of Science (AAAS)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/qirzh7firjdsjhg4tutxtir6ey" style="color: black;">Science</a> </i> &nbsp;
S11C; S12, F and G; and S13). ChIP experiments indicated that VIN3, VRN5, and SWN were absent from the FLC locus before cold ( Fig. 4 and fig. S14 ).  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1126/science.aan1121">doi:10.1126/science.aan1121</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/28818969">pmid:28818969</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/bmg4tzblzfhxldraizgdx6szj4">fatcat:bmg4tzblzfhxldraizgdx6szj4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190503144837/https://science.sciencemag.org/content/sci/357/6356/1142.full.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/47/ce/47ce793f8a5b6ceb0f50ba3c71c7a4c8b18686f1.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1126/science.aan1121"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> sciencemag.org </button> </a>

Evaluation of molecular crystal structures using full interaction maps

Tjelvar S. G. Olsson, Peter A. Wood, Colin R. Groom
<span title="2013-08-25">2013</span> <i title="International Union of Crystallography (IUCr)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/w3vqn7pfvvhztgjopipjutfgtq" style="color: black;">Acta Crystallographica Section A Foundations of Crystallography</a> </i> &nbsp;
The specific crystalline form of a compound has a significant impact on its solid state properties. A key requirement for chemists developing crystalline materials is therefore to understand and evaluate the crystal form under investigation. Using a technique already established for identifying favourable interaction sites in protein pockets we calculate molecular interaction maps within the context of a crystal structure. Using three industrially-relevant compoundssulfathiazole, anastrozole
more &raquo; ... cipamfylline -we illustrate how the molecular interaction maps can be used to evaluate the stability of polymorphic structures, assess multiple types of non-covalent interactions and provide a platform for crystal morphology analysis.
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1107/s0108767313099352">doi:10.1107/s0108767313099352</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/5lspspkaxrf7vb6veddvnpvgm4">fatcat:5lspspkaxrf7vb6veddvnpvgm4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20180723231445/http://journals.iucr.org/a/issues/2013/a1/00/a50764/a50764.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/ce/ab/ceabcb0d936db6ea2002986bb0e40f6a06609be6.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1107/s0108767313099352"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> Publisher / doi.org </button> </a>

A calmodulin-like protein regulates plasmodesmal closure during bacterial immune responses

Bo Xu, Cécilia Cheval, Anuphon Laohavisit, Bradleigh Hocking, David Chiasson, Tjelvar S. G. Olsson, Ken Shirasu, Christine Faulkner, Matthew Gilliham
<span title="2017-05-17">2017</span> <i title="Wiley"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/vlsktox4cfdrtktgckwlr2q66e" style="color: black;">New Phytologist</a> </i> &nbsp;
Reactive oxygen species (ROS) accumulate rapidly upon flg22 treatment (G omez-G omez et al., 1999; Boudsocq et al., 2010) .  ...  (g-i) Co-localization of CML41-GFP (g) with PDLP1-mCherry (h), transiently expressed in Nicotiana benthamiana; bars, 10 lm.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1111/nph.14599">doi:10.1111/nph.14599</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/28513846">pmid:28513846</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC5488192/">pmcid:PMC5488192</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/j7ypuho2kzcw3pnlw72fhite4i">fatcat:j7ypuho2kzcw3pnlw72fhite4i</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20180720011338/https://digital.library.adelaide.edu.au/dspace/bitstream/2440/106051/2/hdl_106051.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/cb/f6/cbf66e7c434dd2206aa9a49f04166ca8565ade8c.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1111/nph.14599"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5488192" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Kilombo: a Kilobot simulator to enable effective research in swarm robotics [article]

Fredrik Jansson, Matthew Hartley, Martin Hinsch, Ivica Slavkov, Noemí Carranza, Tjelvar S. G. Olsson, Roland M. Dries, Johanna H. Grönqvist, Athanasius F. M. Marée, James Sharpe, Jaap A. Kaandorp, Verônica A. Grieneisen
<span title="2016-05-09">2016</span> <i > arXiv </i> &nbsp; <span class="release-stage" >pre-print</span>
R EG I S T E R _ U S E R D A T A ( USERDATA ) // ...  ...  in the simulator is to keep all global variables inside a C structure, declared in the user programme that is registered with the runtime: typedef struct { uint8_t N_Neighbors ; ... } USERDATA ; R E G  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/1511.04285v2">arXiv:1511.04285v2</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/j7rbgqv73vfmtcsjp3ygzn3tw4">fatcat:j7rbgqv73vfmtcsjp3ygzn3tw4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200928182538/https://arxiv.org/pdf/1511.04285v2.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/94/1a/941a4b780bcd049e2b3c71fc91a8483e38f88b56.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/1511.04285v2" title="arxiv.org access"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> arxiv.org </button> </a>

Rust expression browser: an open source database for simultaneous analysis of host and pathogen gene expression profiles with expVIP

Thomas M. Adams, Tjelvar S. G. Olsson, Ricardo H. Ramírez-González, Ruth Bryant, Rosie Bryson, Pablo Eduardo Campos, Paul Fenwick, David Feuerhelm, Charlotte Hayes, Tina Henriksson, Amelia Hubbard, Radivoje Jevtić (+10 others)
<span title="2021-03-09">2021</span> <i title="Springer Science and Business Media LLC"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/4srzxifvfrdlhjhg3dimznkp7m" style="color: black;">BMC Genomics</a> </i> &nbsp;
Background Transcriptomics is being increasingly applied to generate new insight into the interactions between plants and their pathogens. For the wheat yellow (stripe) rust pathogen (Puccinia striiformis f. sp. tritici, Pst) RNA-based sequencing (RNA-Seq) has proved particularly valuable, overcoming the barriers associated with its obligate biotrophic nature. This includes the application of RNA-Seq approaches to study Pst and wheat gene expression dynamics over time and the Pst population
more &raquo; ... osition through the use of a novel RNA-Seq based surveillance approach called "field pathogenomics". As a dual RNA-Seq approach, the field pathogenomics technique also provides gene expression data from the host, giving new insight into host responses. However, this has created a wealth of data for interrogation. Results Here, we used the field pathogenomics approach to generate 538 new RNA-Seq datasets from Pst-infected field wheat samples, doubling the amount of transcriptomics data available for this important pathosystem. We then analysed these datasets alongside 66 RNA-Seq datasets from four Pst infection time-courses and 420 Pst-infected plant field and laboratory samples that were publicly available. A database of gene expression values for Pst and wheat was generated for each of these 1024 RNA-Seq datasets and incorporated into the development of the rust expression browser (http://www.rust-expression.com). This enables for the first time simultaneous 'point-and-click' access to gene expression profiles for Pst and its wheat host and represents the largest database of processed RNA-Seq datasets available for any of the three Puccinia wheat rust pathogens. We also demonstrated the utility of the browser through investigation of expression of putative Pst virulence genes over time and examined the host plants response to Pst infection. Conclusions The rust expression browser offers immense value to the wider community, facilitating data sharing and transparency and the underlying database can be continually expanded as more datasets become publicly available.
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/s12864-021-07488-3">doi:10.1186/s12864-021-07488-3</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/33750297">pmid:33750297</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ubzjrn2dqncntptjdhtzmlqa3m">fatcat:ubzjrn2dqncntptjdhtzmlqa3m</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20210313210049/https://bmcgenomics.biomedcentral.com/track/pdf/10.1186/s12864-021-07488-3.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/8b/83/8b83797b8210e733555e18f784da226931628f0b.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/s12864-021-07488-3"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> springer.com </button> </a>

Author and participant list

Claes Rehbinder, Secretary General
<span title="1990-09-01">1990</span> <i title="UiT The Arctic University of Norway"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/6uhkqz4urncl3dzbw3ia4ixuim" style="color: black;">Rangifer</a> </i> &nbsp;
Steven G* (167) U.S.  ...  Nordöy Lena M (49) USA Rennâringsenheten University of Tromsö S-951 86 Luleâ Department of Arctic Biology Olsson Mats Sweden N-9001 Tromsö Swedish Museum of Natural Norway History Persson Erik* Nilsen  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.7557/2.10.3.894">doi:10.7557/2.10.3.894</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/lsxchra26bfx3hwh2343vrhct4">fatcat:lsxchra26bfx3hwh2343vrhct4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20180720225344/https://septentrio.uit.no/index.php/rangifer/article/download/894/855" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/0e/18/0e18ecb2459309f0cfdcde6ede70de27c6ab6a48.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.7557/2.10.3.894"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a>

Ectopic BASL Reveals Tissue Cell Polarity throughout Leaf Development in Arabidopsis thaliana

Catherine Mansfield, Jacob L. Newman, Tjelvar S.G. Olsson, Matthew Hartley, Jordi Chan, Enrico Coen
<span title="">2018</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/waxwzq3cnbet3cmwccpuk4bel4" style="color: black;">Current Biology</a> </i> &nbsp;
(F-H) Vector orientation in speechless leaves pooled from widths (F) 50-200 mm (n = 185 cells, 4 leaves, s = 55.34), (G) 200-400 mm (n = 1199 cells, 12 leaves, s = 49.43), and (H) 400-800 mm (n = 2063  ...  ., Calder, G., Fox, S., and Lloyd, C. (2007). Cortical microtubule arrays undergo rotary movements in Arabidopsis hypocotyl epidermal cells. Nat. Cell Biol. 9, 171-175. 56.  ... 
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Discovery of Selective and Noncovalent Diaminopyrimidine-Based Inhibitors of Epidermal Growth Factor Receptor Containing the T790M Resistance Mutation

Emily J. Hanan, Charles Eigenbrot, Marian C. Bryan, Daniel J. Burdick, Bryan K. Chan, Yuan Chen, Jennafer Dotson, Robert A. Heald, Philip S. Jackson, Hank La, Michael D. Lainchbury, Shiva Malek (+13 others)
<span title="2014-11-20">2014</span> <i title="American Chemical Society (ACS)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/biqbvvfsgzd3tgqsg6hhdhdk2u" style="color: black;">Journal of Medicinal Chemistry</a> </i> &nbsp;
(10.5 g) as a yellow solid. LCMS (ESI): [M + H] + = 324. 1 H NMR (400 MHz, DMSO-d 6 ): δ 14.00 (s, 1H), 8.61 (s, 1H), 7.88 (s, 1H). (5.2 g, 44%) as a white solid.  ...  (8.9 g, 34%). LCMS (ESI): [M + H] + = 300.0. 1 H NMR (400 MHz, DMSO-d 6 ): δ 8.16 (s, 1H), 6.77 (s, 1H), 6.50 (s, 2H). N-(2-Bromo-5-iodopyridin-4-yl)methanesulfonamide (18).  ...  We thank the CCDC 56 for their help in the use of Relibase to query the PDB and, in particular, Tjelvar Olsson, who provided scripts for the radial distribution plots.  ... 
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The Thermodynamics of Protein–Ligand Interaction and Solvation: Insights for Ligand Design

Tjelvar S.G. Olsson, Mark A. Williams, William R. Pitt, John E. Ladbury
<span title="">2008</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/nk6zopmzsjfizb6z5kztdu477y" style="color: black;">Journal of Molecular Biology</a> </i> &nbsp;
= −RTlnK B and TΔS o = ΔH o − ΔG o for the reported data.  ...  The ΔH o , − TΔS o and ΔG o of protein-ligand complexes derived from ITC experiments at 25°C are shown in Fig. 4 .  ... 
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H-NS is a part of a thermally controlled mechanism for bacterial gene regulation

Shusuke Ono, Martin D. Goldberg, Tjelvar Olsson, Diego Esposito, Jay C. D. Hinton, John E. Ladbury
<span title="2005-10-15">2005</span> <i title="Portland Press Ltd."> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/l57spedjrzck5iv5nagpm5par4" style="color: black;">Biochemical Journal</a> </i> &nbsp;
G. appreciated the support of Charles Penn in preparing the manuscript.  ...  s at 60 • C.  ...  Figure 1 H 1 -NS controls the expression of 77 % of the thermoregulated genes of S. typhimuriumThe cluster diagram shows the expression profile of S. typhimurium LT2 and the hns null mutant JH4000 grown  ... 
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The Automatic Detection of Small Molecule Binding Hotspots on Proteins: Applying Hotspots to Structure-Based Drug Design

Christopher John Radoux, Apollo-University Of Cambridge Repository, Apollo-University Of Cambridge Repository, Tom Blundell, Will Pitt, Colin Groom, Tjelvar Olsson
<span title="2018-04-25">2018</span>
G total = ∆G intrinsic + ∆G rigid (1.3) The Cambridge Using Small Molecule Structural Data in a Drug Discovery Context The vast amount of data in the CSD allows researchers to answer fundamental questions  ...  Equation 1.3 shows the free energy of binding broken down into ∆G rigid , the free energy associated with the loss of rigid body entropy upon binding, and ∆G intrinsic , the remaining free energy terms  ... 
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