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The epiGenomic Efficient Correlator (epiGeEC) tool allows fast comparison of user datasets with thousands of public epigenomic datasets

Jonathan Laperle, Simon Hébert-Deschamps, Joanny Raby, David A de Lima Morais, Michel Barrette, David Bujold, Charlotte Bastin, Marc-Antoine Robert, Jean-François Nadeau, Marie Harel, Alexei Nordell-Markovits, Alain Veilleux (+3 others)
2018 Bioinformatics  
The public epiGeEC Galaxy server Public datasets gathered in the epiGeEC server currently include more than 10,000 processed datasets from IHEC human hg19 and hg38 assemblies, in addition to the mouse  ...  The epiGeEC command line tools EpiGeEC supports the most popular genomic file formats used to represent signal such as bigWig, WIG and bedGraph.  ...  Comparison with other tools We wanted to compare the performance of epiGeEC with the two other tools that can be used to create correlation matrices on many datasets (Ramírez et al., 2016; Kent et al.  ... 
doi:10.1093/bioinformatics/bty655 pmid:30052804 fatcat:cwd5epgijffgtfvnvapb7gzvyq