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The eBioKit, a stand-alone educational platform for bioinformatics

Rafael Hernández-de-Diego, Etienne P. de Villiers, Tomas Klingström, Hadrien Gourlé, Ana Conesa, Erik Bongcam-Rudloff, Francis Ouellette
2017 PLoS Computational Biology  
The eBioKit is a stand-alone educational platform that hosts numerous tools and databases for bioinformatics research and allows training to take place in a controlled environment.  ...  is an important task for the bioinformatics community.  ...  Acknowledgments We thank the EMBnet, H3Abionet, SANBio, and BECA/ILRI communities and members for valuable discussions and for providing logistics and resources.  ... 
doi:10.1371/journal.pcbi.1005616 pmid:28910280 pmcid:PMC5598936 fatcat:7mke2s2wjvdnvdwjp22plk577e

Galaksio, a user friendly workflow-centric front end for Galaxy

Tomas Klingström, Rafael Hernández-de-Diego, Théo Collard, Erik Bongcam-Rudloff
2017 EMBnet journal  
Galaksio provides a workflow-centric graphical user interface for the Galaxy Workflow Management system that is easy to use for biologists and medical researchers who need to run routine tasks in bioinformatics  ...  Technical solutions that distribute the workload more efficiently between researchers with a different education background (e.g., computer scientists and biologists) are therefore necessary to cover some  ...  We would also like to acknowledge the much appreciated help provided by Marius van den Beek at the Institut Curie, Paris, France and other active users in the Galaxy chat.  ... 
doi:10.14806/ej.23.0.897 fatcat:benr62zvvngrxeyho6dk6burvm

H3ABioNet, a sustainable pan-African bioinformatics network for human heredity and health in Africa

Nicola J. Mulder, Ezekiel Adebiyi, Raouf Alami, Alia Benkahla, James Brandful, Seydou Doumbia, Dean Everett, Faisal M. Fadlelmola, Fatima Gaboun, Simani Gaseitsiwe, Hassan Ghazal, Scott Hazelhurst (+24 others)
2015 Genome Research  
Where internet is limited, we make use of eBioKits (http://www. ebiokit.eu/), which are stand-alone devices for bioinformatics data analysis, and we also try to ensure the participants have access to comparable  ...  training and support platform.  ...  The authors thank all the Consortium members for their contributions to H3ABioNet activities. A full list of H3ABioNet Consortium members can be found at http://www.h3abionet.org/home/consortium.  ... 
doi:10.1101/gr.196295.115 pmid:26627985 pmcid:PMC4728379 fatcat:j7m3roimlvffzc5ycfmytkj46m

EMBnet.journal 17.2

EMBnet Journal
2011 EMBnet journal  
We also would like to thank Erik Bongcam-Rudloff for organising the joint EMBnet-EMBRACE workshop on creating web services for Bioinformatics (Uppsala, Sweden, 2008 Acknowledgements The author wishes  ...  to acknowledge the invaluable scientific cooperation of A.  ...  At the stand, there was a working copy of the eBioKit 6 , developed by the research team of Erik Bongcam-Rudloff, which was very well received by attendees. eBioKit is a novel system for teaching bioinformatics  ... 
doi:10.14806/ej.17.2.257 fatcat:77vndhd5afdl5ggw3bgywwxipy

EMBnet.journal 17.1

EMBnet Journal
2011 EMBnet journal  
KLT is funded by a EURYI from the ESF.  ...  number LHSG-CT-2004-512092 and Bioinformatics Infrastructure for Life Sciences (BILS) funded from the Swedish Research Council.  ...  If one wants to use a different mapping tool without trimming capability, such as BWA [3] , the solution is to use a stand-alone adapter trimmer, such as cutadapt.  ... 
doi:10.14806/ej.17.1.242 fatcat:occmin5qhnd7hbe5mjemaynngu