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The chemical organization of signaling interactions
2002
Bioinformatics
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This does not map readily to the block diagram representation familiar to biologists, and obscures the functional organization of signaling networks. ...
Results: I classified 74 interactions between 25 signaling pathways in terms of shared chemical motifs. ...
This work was supported by NCBS/TIFR and a grant from the Wellcome Trust. ...
doi:10.1093/bioinformatics/18.6.855
pmid:12075021
fatcat:r4b2fyxjhzfefoqvu4vhey444y
Allelochemicals and Signaling Chemicals in Plants
2019
Molecules
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Belowground interactions, particularly in the context of soil-borne chemicals driving signaling interactions, are largely unknown, due to the complexity of plant-soil interactions. ...
The plant-organism interactions that are mediated by allelochemicals and signaling chemicals take place both aboveground and belowground. ...
Acknowledgments: The authors thank the partly fund from Nguyen Tat Thanh and Duy Tan Universities, Vietnam.
Conflicts of Interest: The authors declare no conflict of interest. ...
doi:10.3390/molecules24152737
pmid:31357670
pmcid:PMC6695906
fatcat:ttur6dko5rfldbaaf6rpddo7w4
Chemical ecology
1995
Proceedings of the National Academy of Sciences of the United States of America
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All organisms engender chemical signals, and all, in their respective ways, respond to the chemical emissions of others. ...
Molecules that transmit information between organisms are a fundamental part of the regulatory chemicals of nature. ...
All organisms engender chemical signals, and all, in their respective ways, respond to the chemical emissions of others. ...
doi:10.1073/pnas.92.1.1
pmid:7816795
pmcid:PMC42806
fatcat:mngumaehu5h3fmxf4bwfsgteii
Chemical Modifier Screenings as Methods for Identifying Pathway-Targeting Compounds and for Predicting Drug-Drug Interactions
2014
Organic Chemistry: Current Research
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Genetic suppressor screening in different model organisms led to identification of genes functioning in the same signaling pathway. ...
in model organisms have identified and characterized important signaling pathways. ...
doi:10.4172/2161-0401.1000128
fatcat:tdwp2gpv6rfn7ddpezxumdxuc4
Modeling of signaling pathways for endocrine disruptors
2000
Biosystems (Amsterdam. Print)
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Thus we have developed a database complex system that enables one to trace molecular interactions triggered by interaction of receptors with xenobiotic chemicals. ...
Because of the time and costs required for wet lab tests, it is unrealistic to apply these kinds of tests to all such suspicious or probable chemicals. ...
Koyano who carried out molecular modeling calculations for these chemicals. ...
doi:10.1016/s0303-2647(99)00079-9
pmid:10745105
fatcat:wf6epzexgzb4vm5guevnh4fdga
Microbe-driven chemical ecology: past, present and future
2019
The ISME Journal
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We aim to emphasize that future developments in the field of MCE will need to include holistic studies involving organisms at all levels and to consider mechanisms underlying the interactions between viruses ...
However, studies concerning microbial chemical interactions need to consider biotic and abiotic factors on multidimensional levels, which require the development of new tools and approaches mimicking natural ...
Acknowledgements The authors would like to thank all participants of the roundtable session "Microbial chemical ecology: intraspecies and interspecies communication" at ISME 17 for the fruitful discussion ...
doi:10.1038/s41396-019-0469-x
pmid:31289346
pmcid:PMC6794290
fatcat:wotqadwj7vfrvi3ttdu4awvfs4
Interspecies Chemical Communication in Bacterial Development
2009
Annual Review of Microbiology
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Traditional methods in microbiology focus on isolation and characterization of bacteria in monoculture, separating the organisms from the surroundings in which interspecies chemical communication has relevance ...
The hallmark of cellular development, which we characterize as physiological change in response to environmental stimuli, is a defining feature of many bacterial interspecies interactions. ...
ACKNOWLEDGMENTS The authors thank Juan Gonzalez, John Kirby, and Jordan Stewart for contributions to the figures, and E. Gillian Polk for assistance in assembling the manuscript.
LITERATURE CITED ...
doi:10.1146/annurev.micro.091208.073248
pmid:19566421
fatcat:bpstpu7zizczhlnvgmjfcdl4bq
The Ecology of Plant Chemistry and Multi-Species Interactions in Diversified Agroecosystems
2018
Frontiers in Plant Science
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Over the past few years, our knowledge of how ecological interactions shape the structure and dynamics of natural communities has rapidly advanced. ...
Plant chemical traits play key roles in these processes because they mediate a diverse range of direct and indirect interactions in a community-wide context. ...
We also thank the two reviewers and the editor TM for the valuable contributions in the revision process of the manuscript. ...
doi:10.3389/fpls.2018.01713
pmid:30524464
pmcid:PMC6262048
fatcat:rqcjh4pbmfbr5dqrupxmoaggea
From Petri Dishes to Model Ecosystems
2018
Trends in Plant Science
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In this context, we highlight recent breakthroughs that allow for the creation of networks of organisms with independently controlled environments and rates of chemical exchange. ...
Model ecosystems could provide significant insight on the evolution and behavior of real ecosystems. We discuss the advantages and limitations of common approaches like mesocosms. ...
The development of an ecosystem depends on the environment and the chemical (e.g., signaling) and physical (e.g., shading) interactions between its members. ...
doi:10.1016/j.tplants.2018.03.006
pmid:29622395
fatcat:yri5rv43ovdlrdqfxgut7hegca
New Synthesis—Systems Chemical Ecology
2011
Journal of Chemical Ecology
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Present knowledge suggests that in plants, as in other organisms, co-ordinated redox chemical reactions between reactive oxygen species (ROS) and hormones represent the upstream part of this signalling ...
of interacting species. ...
Present knowledge suggests that in plants, as in other organisms, co-ordinated redox chemical reactions between reactive oxygen species (ROS) and hormones represent the upstream part of this signalling ...
doi:10.1007/s10886-011-0041-2
pmid:22105563
fatcat:36trj57drfhqzatwnuremmpyne
Do you speak chemistry?
2016
EMBO Reports
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Conflict of interest The authors declare that they have no conflict of interest. ...
Figure 1 . 1 Simplified model of communication between two organisms.
Figure 2 . 2 Model of plant-insect herbivore interactions and associated chemical defense mechanisms. ...
these signals are almost always chemical compounds. ...
doi:10.15252/embr.201642301
pmid:27113749
pmcid:PMC5341511
fatcat:7liyml2qara3zaydegs7xflvpe
Chemical communication in a post-genomic world
2003
Proceedings of the National Academy of Sciences of the United States of America
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Chemosensory signaling shares several features irrespective of taxon; components of the vast majority of chemosensory signaling systems include a receptor that interacts with a signal molecule, a signal ...
Many of the most abundantly represented genes in the genomes characterized to date encode proteins mediating interactions among organisms, including odorant receptors and binding proteins, enzymes involved ...
doi:10.1073/pnas.2335883100
pmid:14595008
pmcid:PMC304109
fatcat:py74acqkina3dofoziklovbw5a
The raison d'être of chemical ecology
2015
Ecology
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Founded on the notion that all organisms use endogenous hormones and chemical compounds that mediate interactions, chemical ecology has flourished over the past 50 years since its origin. ...
ecosystem effects of chemically mediated species interactions. ...
All organisms engender chemical signals, and all, in their respective ways, respond to the chemical emissions of others. ...
doi:10.1890/14-1474.1
pmid:26236859
fatcat:bxv63fyucrdzzjunb73ps5vsxm
Chiral recognition in metal–organic frameworks studied by solid-state NMR spectroscopy using chiral solvating agents
2012
Chemical Communications
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Metal-Organic Frameworks (MOFs) 2-4 are hybrid materials formed by organic and inorganic building blocks. 5 The interactions between organic and inorganic constituents are relatively strong 6 resulting ...
1 Magnetic resonance spectroscopy is frequently used for the characterization of porous materials and their interactions with adsorbed species (host-guest interactions). ...
Comparison of the spectra loaded with (R)-and (S)-TFPE reveals different chemical shifts for selected signals. ...
doi:10.1039/c2cc35366k
pmid:22932689
fatcat:jh2verm53fcm5guuluye2twt7q
Pheromones and Behavior
[chapter]
2010
Chemical Communication in Crustaceans
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Signature mixtures are variable chemical mixtures (a subset of the molecules in an animal's chemical profile) learned by other conspecifics and used to recognize an organism as an individual (e.g., lobsters ...
Chemical communication is widely used by crustaceans, for example, in sexual interactions, larval release, and planktonic settlement. ...
Thomas) and Zoology Departments for supporting me over many years, and the editors and chapter referees for their suggestions. ...
doi:10.1007/978-0-387-77101-4_2
fatcat:tybsv5ymjnbpbe27zgmwfbjiam
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