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The atomic web browser

Cesare Pautasso, Masiar Babazadeh
<span title="">2013</span> <i title="ACM Press"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/s4hirppq3jalbopssw22crbwwa" style="color: black;">Proceedings of the 22nd International Conference on World Wide Web - WWW &#39;13 Companion</a> </i> &nbsp;
The Atomic Web Browser achieves atomicity for distributed transactions across multiple RESTful APIs.  ...  Once the user indicates that the navigation has successfully completed, the Atomic Web browser takes care of confirming the local transitions to achieve the atomicity of the global transaction.  ...  For example, when a Web browser interacts with more than one e-commerce service, we want to ensure that all interactions can be performed atomically in order to complete the reservation of all the purchased  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1145/2487788.2487899">doi:10.1145/2487788.2487899</a> <a target="_blank" rel="external noopener" href="https://dblp.org/rec/conf/www/PautassoB13.html">dblp:conf/www/PautassoB13</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/7cziv5ztx5b2rhflxnujxrfo6a">fatcat:7cziv5ztx5b2rhflxnujxrfo6a</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20180830212641/http://pautasso.info/biblio-pdf/resttcc-www2013.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/f8/e8/f8e8f00fb1ebc0c2dc9b64c87e72521017d07bec.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1145/2487788.2487899"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> acm.org </button> </a>

Constructing reliable Web applications using atomic actions

M.C. Little, S.K. Shrivastava, S.J. Caughey, D.B. Ingham
<span title="">1997</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/jgy6ij3ctzgz3dcvvze6ztirxm" style="color: black;">Computer networks and ISDN systems</a> </i> &nbsp;
The Web frequently suffers from failures which affect the performance and consistency of applications run over it.  ...  An important fault-tolerance technique is the use of atomic actions (atomic transactions) for controlling operations on services.  ...  Acknowledgments The work reported here has been partially funded by grants from the Engineering and Physical Sciences Research Council (EPSRC) and the UK Ministry of Defense (Grant Numbers GR/H81078 and  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/s0169-7552(97)00020-2">doi:10.1016/s0169-7552(97)00020-2</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ek5ierpt6za4xifsvbp4dwklga">fatcat:ek5ierpt6za4xifsvbp4dwklga</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170705104734/http://w3objects.ncl.ac.uk/pubs/crwaaa/pdf/paper.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/42/64/4264415357e87aea31a182f95b0fde0cf2fb39d1.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/s0169-7552(97)00020-2"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> elsevier.com </button> </a>

NGL Viewer: a web application for molecular visualization

Alexander S. Rose, Peter W. Hildebrand
<span title="2015-04-29">2015</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/hfp6p6inqbdexbsu4r7usndpte" style="color: black;">Nucleic Acids Research</a> </i> &nbsp;
By fully adopting capabilities of modern web browsers, such as WebGL, for molecular graphics, the viewer can interactively display large molecular complexes and is also unaffected by the retirement of  ...  The NGL Viewer (http://proteinformatics.charite.de/ ngl) is a web application for the visualization of macromolecular structures.  ...  ACKNOWLEDGEMENT We thank Heiko Bittner, Johanna Tiemann and Jochen Ismer for testing the software and suggesting features.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gkv402">doi:10.1093/nar/gkv402</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/25925569">pmid:25925569</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC4489237/">pmcid:PMC4489237</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/tkjacmsrabhcblzvhwndznml4i">fatcat:tkjacmsrabhcblzvhwndznml4i</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20180730050035/https://watermark.silverchair.com/gkv402.pdf?token=AQECAHi208BE49Ooan9kkhW_Ercy7Dm3ZL_9Cf3qfKAc485ysgAAAaAwggGcBgkqhkiG9w0BBwagggGNMIIBiQIBADCCAYIGCSqGSIb3DQEHATAeBglghkgBZQMEAS4wEQQMJis1JPhH-FsqIwoDAgEQgIIBU-DcARLlmJCNyPpCpQtGfWuzX8o5UWLbRVJBbKZ6tJFBsvWjl5bv2qQUHfVnJW3E_GH2kjcxwrlT5vY1T1XhtBcM7BHfisq9E2f8GhTTOxsRl_7r9dUJAOv4wL29ZFPkzu90fxESpHfilw66cXVRP1YLQ0cMN_rVcI-OD7EZuNgilEF_rQ14TlDky4HMppWu_lghZPcOgzcLHzzWI4JGNL6o_egxaoohdngu9FJH-ukl9Y63QqbDw2D9oxWM0iX-vLtTm_8gJV6JY2ChB7_YHYsqpXOZDI3MXFPgP7e0C7sQMQ3-DjIsvi1EgHPt2CFP0suYtTccldT10sWBDFtuQv_ewuHRaCIK9crfm-AFBPeFN7VcSU71BBe0-k9ykpoeRIN9y7zjIKZSfS0gU9sOmef3FGrSrlgB-yDlpmoYJ_iow-jN_LVFJfiYTd9zMyNgY4Larw" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/48/cf/48cfb33d147637b51fb286f64dc8d208fd1d3543.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/nar/gkv402"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> oup.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4489237" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Towards Commodity, Web-Based Augmented Reality Applications for Research and Education in Chemistry and Structural Biology [article]

Luciano A. Abriata
<span title="2018-08-10">2018</span> <i > arXiv </i> &nbsp; <span class="release-stage" >pre-print</span>
such as speech-based communication, and sockets for concurrent collaboration through the internet -all technologies that are today maturing in web browsers- to deliver the next generation of tools for  ...  The examples, which run in any standard web browser and are accessible at https://lucianoabriata.altervista.org/jsinscience/arjs/armodeling/ together with demo videos, showcase applications that could  ...  Hardware The web apps presented here were tested on laptops with built-in webcams running Windows (using Firefox and Chrome web browsers), Linux (only Firefox tested) and Mac (Safari web browser) operating  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/1806.08332v5">arXiv:1806.08332v5</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/scltnv3nybdh3n7zaltclwaeka">fatcat:scltnv3nybdh3n7zaltclwaeka</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20191023223734/https://arxiv.org/pdf/1806.08332v5.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/c9/aa/c9aae49f3ea5d878295a30330fed49fe6b1ea491.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/1806.08332v5" title="arxiv.org access"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> arxiv.org </button> </a>

HTMoL: full-stack solution for remote access, visualization, and analysis of molecular dynamics trajectory data

Mauricio Carrillo-Tripp, Leonardo Alvarez-Rivera, Omar Israel Lara-Ramírez, Francisco Javier Becerra-Toledo, Adan Vega-Ramírez, Emmanuel Quijas-Valades, Eduardo González-Zavala, Julio Cesar González-Vázquez, Javier García-Vieyra, Nelly Beatriz Santoyo-Rivera, Sergio Victor Chapa-Vergara, Amilcar Meneses-Viveros
<span title="">2018</span> <i title="Springer Nature America, Inc"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/eqrkonq3ofesljyzeksgdlfeb4" style="color: black;">Journal of Computer-Aided Molecular Design</a> </i> &nbsp;
To solve this problem, we present HTMoL, a state-of-the-art plug-in-free hardware-accelerated web application specially designed to efficiently transfer and visualize raw MD trajectory files on a web browser  ...  All major browsers are supported.  ...  This, together with the constant increase of web browsers and GPU speed, will allow the trajectory display of very large systems (10 5 − 10 6 atoms).  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/s10822-018-0141-y">doi:10.1007/s10822-018-0141-y</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/30084079">pmid:30084079</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/ghtw74didffulkm6cjcguatcoe">fatcat:ghtw74didffulkm6cjcguatcoe</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20190218142621/http://pdfs.semanticscholar.org/0cd2/c7ffc031aae29e9e306b2fe985d16043407f.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/0c/d2/0cd2c7ffc031aae29e9e306b2fe985d16043407f.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/s10822-018-0141-y"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> springer.com </button> </a>

Building blocks for commodity augmented reality-based molecular visualization and modeling in web browsers

Luciano A. Abriata
<span title="2020-02-17">2020</span> <i title="PeerJ"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/zs2czkfyybggbpvr26rbyxpsjy" style="color: black;">PeerJ Computer Science</a> </i> &nbsp;
These web apps provide virtual alternatives to physical, plastic-made molecular modeling kits, where the computer augments the experience with information about spatial interactions, reactivity, energetics  ...  Here, I discuss building blocks for creating marker-based AR applications that run as web pages on regular computers, and explore how they can be exploited to develop web content for handling virtual molecular  ...  ACKNOWLEDGEMENTS I acknowledge all the members of the communities that develop the client-side web programming tools used here, as well as the very helpful communities who contribute to their improvement  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.7717/peerj-cs.260">doi:10.7717/peerj-cs.260</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/33816912">pmid:33816912</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC7924717/">pmcid:PMC7924717</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/2uoto3ahbrbzrmxixvzf6o2oaa">fatcat:2uoto3ahbrbzrmxixvzf6o2oaa</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200218064240/https://peerj.com/articles/cs-260.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/5d/68/5d6806ef418ff1f7f49d3b33381556197045e24e.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.7717/peerj-cs.260"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> Publisher / doi.org </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7924717" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

DETERMINING THE NAVIGATIONAL AIDS USE ON THE INTERNET: The Information Technologies Teacher Candidates' Case

Abdullah KUZU, Mehmet FIRAT
<span title="">2010</span> <i title="Anadolu University, Eskisehir"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/abyy73h7zrcmta3rvauxmlq36q" style="color: black;">The Turkish Online Journal of Distance Education</a> </i> &nbsp;
The findings of the study revealed that the teacher candidates did not use bookmarks, Web maps, RSS and atom feeds sufficiently.  ...  Therefore, navigational aids are frequently used in today's Web browsers and Web sites to help users navigate on the Internet.  ...  For this reason, navigational aids such as Web maps, bookmarks (favorites) and Web feeds (such as RSS, atom etc.) are frequently used in especially next generation Web browsers and Web sites.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener" href="https://doaj.org/article/9c6ce1f0c2124d4fa85479a0e064a019">doaj:9c6ce1f0c2124d4fa85479a0e064a019</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/mnw5b4hdlvaqdfgjepi3aymfp4">fatcat:mnw5b4hdlvaqdfgjepi3aymfp4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20101207061337/http://tojde.anadolu.edu.tr:80/tojde39/pdf/article_7.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/1e/41/1e410927f58cda8dc19f3d458a1d42a0e3c6f227.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a>

OpenMX viewer: A web-based crystalline and molecular graphical user interface program

Yung-Ting Lee, Taisuke Ozaki
<span title="2019-03-15">2019</span> <i title="Elsevier BV"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/rqyaqz3s4neixaio7kt7pdll5q" style="color: black;">Journal of Molecular Graphics and Modelling</a> </i> &nbsp;
conveniently in a web browser.  ...  Furthermore, the Band Structure Viewer is implemented for showing a band structure in a web browser.  ...  Acknowledgments This paper is partly based on results obtained from a project commissioned by the New En-  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.jmgm.2019.03.013">doi:10.1016/j.jmgm.2019.03.013</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/30908996">pmid:30908996</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/k6avmyfxtjewdftbdkxlk7yjvi">fatcat:k6avmyfxtjewdftbdkxlk7yjvi</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200930012321/https://arxiv.org/pdf/1904.03992v1.pdf" title="fulltext PDF download [not primary version]" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <span style="color: #f43e3e;">&#10033;</span> <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/b0/b2/b0b23effb6d6f5c0c4e6d229982019047d9166bf.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1016/j.jmgm.2019.03.013"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> elsevier.com </button> </a>

Analyzing the BrowserID SSO System with Primary Identity Providers Using an Expressive Model of the Web [chapter]

Daniel Fett, Ralf Küsters, Guido Schmitz
<span title="">2015</span> <i title="Springer International Publishing"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/2w3awgokqne6te4nvlofavy5a4" style="color: black;">Lecture Notes in Computer Science</a> </i> &nbsp;
For example, BrowserID uses the postMessage mechanism for cross-origin inter-frame communication (i.e., communication within a browser between different windows) and the web storage concept of modern browsers  ...  Browsers may be corrupted dynamically by the adversary. Based on this general web model, we analyzed the security of the secondary IdP mode of BrowserID [13] .  ...  Communication Model The main entities in the communication model are atomic processes, which will be used to model web browsers, web servers, DNS servers as well as web and network attackers.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/978-3-319-24174-6_3">doi:10.1007/978-3-319-24174-6_3</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/64rzpmkaijawhf2hwjwwrndxgi">fatcat:64rzpmkaijawhf2hwjwwrndxgi</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170301064857/https://infsec.uni-trier.de/people/publications/paper/FettKuestersSchmitz-ESORICS-2015.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/fa/e2/fae20a92bcdb150a2ed8c9b9f6eb4d0975b045bb.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1007/978-3-319-24174-6_3"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> springer.com </button> </a>

An Expressive Model for the Web Infrastructure: Definition and Application to the Browser ID SSO System

Daniel Fett, Ralf Kusters, Guido Schmitz
<span title="">2014</span> <i title="IEEE"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/inod5dqjxfdj3bnjykkklcg7d4" style="color: black;">2014 IEEE Symposium on Security and Privacy</a> </i> &nbsp;
The web constitutes a complex infrastructure and, as demonstrated by numerous attacks, rigorous analysis of standards and web applications is indispensable.  ...  Inspired by successful prior work, in particular the work by Akhawe et al. as well as Bansal et al., in this work we propose a formal model for the web infrastructure.  ...  Bohannon and Pierce propose a formal model of a web browser core [9] . The scope and goal of the model is different to ours, but some mechanisms can be found in both models.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1109/sp.2014.49">doi:10.1109/sp.2014.49</a> <a target="_blank" rel="external noopener" href="https://dblp.org/rec/conf/sp/FettKS14.html">dblp:conf/sp/FettKS14</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/v7wvlsm4dna43k4fn5liwksswy">fatcat:v7wvlsm4dna43k4fn5liwksswy</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20161225040726/https://www.ieee-security.org/TC/SP2014/papers/AnExpressiveModelfortheWebInfrastructure_c_DefinitionandApplicationtotheBrowserIDSSOSystem.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/08/a0/08a0611f81a3ccb9602c9648d1f6dfae9e8051c4.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1109/sp.2014.49"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> ieee.com </button> </a>

CH5M3D: an HTML5 program for creating 3D molecular structures

Clarke W Earley
<span title="">2013</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/5aubiwi6v5beng6iqzj577kiaa" style="color: black;">Journal of Cheminformatics</a> </i> &nbsp;
For this reason, we have developed a library written in JavaScript to allow for the simple creation of web-based applications that should run on any browser capable of rendering HTML5 web pages.  ...  Both atoms and bonds can be added or deleted, and rotation about bonds is allowed.  ...  Acknowledgements The support of Kent State University at Stark is gratefully acknowledged.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/1758-2946-5-46">doi:10.1186/1758-2946-5-46</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/24246004">pmid:24246004</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC4177146/">pmcid:PMC4177146</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/6roacxkp2fgrzha2zaarkuilla">fatcat:6roacxkp2fgrzha2zaarkuilla</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170830201236/https://jcheminf.springeropen.com/track/pdf/10.1186/1758-2946-5-46?site=jcheminf.springeropen.com" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/29/4f/294f9650e712f23ae516a0383aeb1abc61b63945.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/1758-2946-5-46"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> springer.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4177146" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

JSME: a free molecule editor in JavaScript

Bruno Bienfait, Peter Ertl
<span title="">2013</span> <i title="Springer Nature"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/5aubiwi6v5beng6iqzj577kiaa" style="color: black;">Journal of Cheminformatics</a> </i> &nbsp;
Today, when a web browser has become the universal scientific user interface, a tool to edit molecules directly within the web browser is essential.  ...  One of the most popular tools for molecular structure input on the web is the JME applet.  ...  Acknowledgements The authors would like to thank Markus Sitzmann, Oliver Sacher and Luc Patiny for testing the development version of JSME and for helpful comments and suggestions.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/1758-2946-5-24">doi:10.1186/1758-2946-5-24</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/23694746">pmid:23694746</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC3662632/">pmcid:PMC3662632</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/j4e2e5zt7zandilcgysbmdfkqa">fatcat:j4e2e5zt7zandilcgysbmdfkqa</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20140304192311/http://www.jcheminf.com/content/pdf/1758-2946-5-24.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1186/1758-2946-5-24"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="unlock alternate icon" style="background-color: #fb971f;"></i> springer.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3662632" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

SimiCon: a web tool for protein-ligand model comparison through calculation of equivalent atomic contacts

M. Rueda, V. Katritch, E. Raush, R. Abagyan
<span title="2010-09-24">2010</span> <i title="Oxford University Press (OUP)"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/wmo54ba2jnemdingjj4fl3736a" style="color: black;">Bioinformatics</a> </i> &nbsp;
The web server can be executed remotely without a browser to allow users to automate multiple calculations.  ...  SimiCon is a web server designed for an automated identification of equivalent protein-ligand atomic contacts in different conformational models of a complex.  ...  Funding: Marie Curie OIF Fellowship of the European Commission (M.R.); National Institutes of Health (grants R01GM071872 and R01GM074832 to V.K. and R.A.). Conflict of Interest: none declared.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/bioinformatics/btq504">doi:10.1093/bioinformatics/btq504</a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pubmed/20871105">pmid:20871105</a> <a target="_blank" rel="external noopener" href="https://pubmed.ncbi.nlm.nih.gov/PMC2981495/">pmcid:PMC2981495</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/523b3vvjrvcshgjbuywmf3ua6u">fatcat:523b3vvjrvcshgjbuywmf3ua6u</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20200210220410/http://europepmc.org/backend/ptpmcrender.fcgi?accid=PMC2981495&amp;blobtype=pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/ba/c6/bac68ed6bddf4a991d1c3b716301861395270e81.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1093/bioinformatics/btq504"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> oup.com </button> </a> <a target="_blank" rel="external noopener" href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2981495" title="pubmed link"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> pubmed.gov </button> </a>

Automatic Annotation of XHTML Pages with Audio Components [article]

Paul Fodor
<span title="2007-05-02">2007</span> <i > arXiv </i> &nbsp; <span class="release-stage" >pre-print</span>
format to represent multimodal dialog; and (2) Opera Browser, an already standardized browser which we adopt as an interface of the XHTML+VoiceXML output of annotating.  ...  In this paper we present Deiush, a multimodal system for browsing hypertext Web documents. The Deiush system is based on our novel approach to automatically annotate hypertext Web documents (i.e.  ...  In this way, the user can interact with the Web page in two different ways: using the graphical components in the Web page or using the voice tools existent in the Opera browser.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/cs/0703071v3">arXiv:cs/0703071v3</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/en5r7ptebbdgvm7foru2mn6s6y">fatcat:en5r7ptebbdgvm7foru2mn6s6y</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20191014020411/https://arxiv.org/pdf/cs/0703071v3.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/41/5a/415a3e354e9abd59dba95714d3d3e8d9b10a521b.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener" href="https://arxiv.org/abs/cs/0703071v3" title="arxiv.org access"> <button class="ui compact blue labeled icon button serp-button"> <i class="file alternate outline icon"></i> arxiv.org </button> </a>

WAI-ARIA live regions and HTML5

Peter Thiessen
<span title="">2011</span> <i title="ACM Press"> <a target="_blank" rel="noopener" href="https://fatcat.wiki/container/rkdxnpstlbbjlgo2miuhpb727i" style="color: black;">Proceedings of the International Cross-Disciplinary Conference on Web Accessibility - W4A &#39;11</a> </i> &nbsp;
The W3C Web Accessibility Initiative -Accessible Rich Internet Applications (WAI-ARIA) and HTML5 are exciting and relatively new specifications with many new semantics that together help describe the complex  ...  desktop like behavior found in many Web applications.  ...  I also thank David Sloan for helping me come up with the idea for this paper. 7.  ... 
<span class="external-identifiers"> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1145/1969289.1969324">doi:10.1145/1969289.1969324</a> <a target="_blank" rel="external noopener" href="https://dblp.org/rec/conf/w4a/Thiessen11.html">dblp:conf/w4a/Thiessen11</a> <a target="_blank" rel="external noopener" href="https://fatcat.wiki/release/gj4izn4u4ffmxg3aevkitr3fd4">fatcat:gj4izn4u4ffmxg3aevkitr3fd4</a> </span>
<a target="_blank" rel="noopener" href="https://web.archive.org/web/20170706090122/http://www.ra.ethz.ch/cdstore/www2011/W4A/p18.pdf" title="fulltext PDF download" data-goatcounter-click="serp-fulltext" data-goatcounter-title="serp-fulltext"> <button class="ui simple right pointing dropdown compact black labeled icon button serp-button"> <i class="icon ia-icon"></i> Web Archive [PDF] <div class="menu fulltext-thumbnail"> <img src="https://blobs.fatcat.wiki/thumbnail/pdf/f1/7c/f17c57c6e706425347078943da0076b7bb3096e9.180px.jpg" alt="fulltext thumbnail" loading="lazy"> </div> </button> </a> <a target="_blank" rel="external noopener noreferrer" href="https://doi.org/10.1145/1969289.1969324"> <button class="ui left aligned compact blue labeled icon button serp-button"> <i class="external alternate icon"></i> acm.org </button> </a>
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