Filters








302 Hits in 9.5 sec

The Zebrafish Information Network (ZFIN): a resource for genetic, genomic and developmental research

J. Sprague
2001 Nucleic Acids Research  
The Zebrafish Information Network, ZFIN, is a WWW community resource of zebrafish genetic, genomic and developmental research information (http://zfin.org).  ...  ZFIN provides an anatomical atlas and dictionary, developmental staging criteria, research methods, pathology information and a link to the ZFIN relational database (http://zfin.org/ZFIN/).  ...  ACKNOWLEDGEMENTS The development of the Zebrafish Information Network is generously supported by the W.M. Keck Foundation. Funds are also provided by the NIH (RR/HD12546).  ... 
doi:10.1093/nar/29.1.87 pmid:11125057 pmcid:PMC29808 fatcat:hfkuvvjsebazjig7zdqamrc2ii

The Zebrafish Information Network (ZFIN): the zebrafish model organism database

J. Sprague
2003 Nucleic Acids Research  
The Zebrafish Information Network (ZFIN) is a web based community resource that serves as a centralized location for the curation and integration of zebrafish genetic, genomic and developmental data.  ...  ACKNOWLEDGEMENT Funds for the development of the Zebrafish Information Network are provided by the NIH (RR/HD 12546).  ...  One of the many challenges produced by the rapid expansion of zebrafish research is to provide a centralized resource for the curation and integration of zebrafish data and their integration with data  ... 
doi:10.1093/nar/gkg027 pmid:12519991 pmcid:PMC165474 fatcat:5yyclbuwuzc5vhny2ueudbgrge

The Zebrafish Information Network: the zebrafish model organism database

J. Sprague
2006 Nucleic Acids Research  
10 The Zebrafish Information Network (ZFIN; http://zfin. org) is a web based community resource that implements the curation of zebrafish genetic, genomic and developmental data.  ...  ZFIN provides an integrated representation of mutants, genes, genetic markers, 15 mapping panels, publications and community resources such as meeting announcements and contact information.  ...  ACKNOWLEDGEMENTS 5 Funds for the development of the Zebrafish Information Network are provided by the NIH HG002659.  ... 
doi:10.1093/nar/gkj086 pmid:16381936 pmcid:PMC1347449 fatcat:hn2czv6dkbg2rjpedqetwwym5i

Zebrafish Information Network, the knowledgebase for Danio rerio research

Yvonne M Bradford, Ceri E Van Slyke, Leyla Ruzicka, Amy Singer, Anne Eagle, David Fashena, Douglas G Howe, Ken Frazer, Ryan Martin, Holly Paddock, Christian Pich, Sridhar Ramachandran (+1 others)
2022 Genetics  
The Zebrafish Information Network (ZFIN, zfin.org) is the central repository for Danio rerio genetic and genomic data.  ...  Recently, ZFIN and six other model organism knowledgebases have collaborated to form the Alliance of Genome Resources, aiming to develop sustainable genome information resources that enable the use of  ...  Introduction The Zebrafish Information Network (ZFIN, zfin.org) is the knowledgebase for the model organism Danio rerio (zebrafish).  ... 
doi:10.1093/genetics/iyac016 pmid:35166825 pmcid:PMC8982015 fatcat:v737talhbvbqdn4edyablydogi

The Zebrafish Information Network: major gene page and home page updates

Douglas G Howe, Sridhar Ramachandran, Yvonne M Bradford, David Fashena, Sabrina Toro, Anne Eagle, Ken Frazer, Patrick Kalita, Prita Mani, Ryan Martin, Sierra Taylor Moxon, Holly Paddock (+7 others)
2020 Nucleic Acids Research  
The Zebrafish Information Network (ZFIN) (https://zfin.org/) is the database for the model organism, zebrafish (Danio rerio).  ...  ZFIN expertly curates, organizes, and provides a wide array of zebrafish genetic and genomic data, including genes, alleles, transgenic lines, gene expression, gene function, mutant phenotypes, orthology  ...  INTRODUCTION The Zebrafish Information Network (ZFIN) (https://zfin. org/) is the central repository for zebrafish (Danio rerio) genetic and genomic data.  ... 
doi:10.1093/nar/gkaa1010 pmid:33170210 pmcid:PMC7778988 fatcat:sofsxiaecncnnkvkeh3y5nwem4

The Zebrafish Information Network: the zebrafish model organism database provides expanded support for genotypes and phenotypes

J. Sprague, L. Bayraktaroglu, Y. Bradford, T. Conlin, N. Dunn, D. Fashena, K. Frazer, M. Haendel, D. G. Howe, J. Knight, P. Mani, S. A.T. Moxon (+10 others)
2007 Nucleic Acids Research  
The Zebrafish Information Network (ZFIN, http:// zfin.org), the model organism database for zebrafish, provides the central location for curated zebrafish genetic, genomic and developmental data.  ...  ZFIN is the definitive source for zebrafish gene and allele nomenclature, the zebrafish anatomical ontology (AO) and for zebrafish gene ontology (GO) annotations.  ...  ACKNOWLEDGEMENTS Funds for the development of the Zebrafish Information Network are provided by the NIH HG002659.  ... 
doi:10.1093/nar/gkm956 pmid:17991680 pmcid:PMC2238839 fatcat:3jookkeqbfbifhku6ymfqsns7q

ZFIN, The zebrafish model organism database: Updates and new directions

Leyla Ruzicka, Yvonne M. Bradford, Ken Frazer, Douglas G. Howe, Holly Paddock, Sridhar Ramachandran, Amy Singer, Sabrina Toro, Ceri E. Van Slyke, Anne E. Eagle, David Fashena, Patrick Kalita (+8 others)
2015 Genesis  
The Zebrafish Model Organism Database (ZFIN; http://zfin.org) is the central resource for genetic and genomic data from zebrafish (Danio rerio) research.  ...  The use of zebrafish as a model for human disease is increasing.  ...  Acknowledgments Grant Support: This work was supported by the National Human Genome Research Institute (HG002659, and HG004834) of the National Institutes of Health.  ... 
doi:10.1002/dvg.22868 pmid:26097180 pmcid:PMC4545674 fatcat:tba5jdejl5grxavmzhzgzjfcpa

Mapping of Zebrafish Research: A Global Outlook

Priyamvadah Kinth, Gopalakrishnan Mahesh, Yatish Panwar
2013 Zebrafish  
On the basis of analysis of 17,151 records on zebrafish identified from Zebrafish Information Network: the zebrafish model organism database and Web of Science, the research performance on this model organism  ...  The earliest research work on zebrafish as reflected in the databases goes back to 1951. After a rather slow growth till the 1980s, research on zebrafish gained momentum in the 1990s.  ...  Acknowledgment The authors thank the anonymous reviewers whose insightful comments enabled us to improve several sections of the article. Disclosure Statement No competing financial interests exist.  ... 
doi:10.1089/zeb.2012.0854 pmid:24131434 pmcid:PMC3842892 fatcat:rzlfborklffxhnjdurtd7b2g5q

Data integration for spatio-temporal patterns of gene expression of zebrafish development: the GEMS database

Mounia Belmamoune, Fons J Verbeek
2008 Journal of Integrative Bioinformatics  
These terms are extracted from a formal anatomical ontology, i.e. the Developmental Anatomy Ontology of Zebrafish (DAOZ).  ...  At the other hand, GO terms extend GEMS expression patterns integration to a wide range of bioinformatics resources.  ...  Acknowledgments The authors would like to express gratitude to Dr. M.C. Welten, W. Spoor and A. Sels for their contributions by submitting experimental data to the system.  ... 
doi:10.2390/biecoll-jib-2008-92 pmid:20134060 fatcat:aeyoeaovafattonwa6hhestwb4

Data Integration for Spatio-Temporal Patterns of Gene Expression of Zebrafish development: the GEMS database

Mounia Belmamoune, Fons J. Verbeek
2008 Journal of Integrative Bioinformatics  
These terms are extracted from a formal anatomical ontology, i.e. the Developmental Anatomy Ontology of Zebrafish (DAOZ).  ...  At the other hand, GO terms extend GEMS expression patterns integration to a wide range of bioinformatics resources.  ...  Acknowledgments The authors would like to express gratitude to Dr. M.C. Welten, W. Spoor and A. Sels for their contributions by submitting experimental data to the system.  ... 
doi:10.1515/jib-2008-92 fatcat:ostxgnscnnfxrjehb6ehkfhu4m

DANIO-CODE: Toward an Encyclopedia of DNA Elements in Zebrafish

Haihan Tan, Daria Onichtchouk, Cecilia Winata
2016 Zebrafish  
The zebrafish has emerged as a model organism for genomics studies.  ...  This meeting is a follow-up of a similar previous workshop held 2 years earlier and represents a push toward the formalization of a community effort to annotate functional elements in the zebrafish genome  ...  The organizers would also like to thank Jana Maier for help with organization of the workshop. C.W. is supported by the EU FP7 Grant FishMed GA No. 316125 and D.O. is supported by A7-DFG-EXC294.  ... 
doi:10.1089/zeb.2015.1179 pmid:26671609 pmcid:PMC4742988 fatcat:2yr6iyy5lnag3indn3u2yoi5ne

Zebrafish Resources on the Internet

S. A. Smith
2012 ILAR journal  
This overview of Internet resources is intended to aid both beginning and experienced individuals in the search for such information.  ...  This has been paralleled by a corresponding increase in the amount of information and literature about this species on the Internet.  ...  The zebrafi sh has a fully sequenced accessible genome and numerous well-characterized mutants, which allows for large-scale forward genetic analysis.  ... 
doi:10.1093/ilar.53.2.208 pmid:23382352 fatcat:3nse5uigvvg7foms5lb2okt2hy

A curated online resource for SOX10 and pigment cell molecular genetic pathways

L. L. Baxter, R. T. Moreland, A.-D. Nguyen, T. G. Wolfsberg, W. J. Pavan
2010 Database: The Journal of Biological Databases and Curation  
color, and including useful links to genomic and sequence data, gene knockout models and the ZFIN database; however, no primary literature information is included.  ...  However, they require payment for usage, and also produce networks in a high-throughput fashion, so that analysis of a specific cell type and/or developmental stage typically requires independent filtering  ... 
doi:10.1093/database/baq025 pmid:20974870 pmcid:PMC2975454 fatcat:upa5kanfgbb4rptwjvhotgsc5e

ZebraShare: a new venue for rapid dissemination of zebrafish mutant data

April DeLaurier, Douglas G. Howe, Leyla Ruzicka, Adam N. Carte, Lacie Mishoe Hernandez, Kali J Wiggins, Mika M. Gallati, Kayce Vanpelt, Frances Loyo Rosado, Katlin G. Pugh, Chasey J. Shabdue, Khadijah Jihad (+2 others)
2021 PeerJ  
In order for labs to document and share information about these lines, we have created ZebraShare as a new resource offered within ZFIN.  ...  Conclusion ZebraShare provides an opportunity for researchers to directly share information about mutant lines within ZFIN, which is widely used by the community as a central database of information about  ...  ZFIN is supported by the National Human Genome Research Institute at the National Institutes of Health [U41  ... 
doi:10.7717/peerj.11007 pmid:33954026 pmcid:PMC8051354 fatcat:kq2nl5parrfwdlfinnxpk7yc74

Page 469 of Behavior Research Methods Vol. 38, Issue 3 [page]

2006 Behavior Research Methods  
The zebrafish information network (ZFIN): A resource for genetic, genomic and developmental research. Nucleic Acid Research, 29,87-90. Stickney, H. L., Schmutz, J., Woods, I. G., Holtzer, C.  ...  A comparative map of the zebrafish ge¬ nome. Genome Research, 10, 1903-1914. Zhang, J., Talbot, W. S., & Schier, A. F. (1998).  ... 
« Previous Showing results 1 — 15 out of 302 results