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The Universal Protein Resource (UniProt)
2004
Nucleic Acids Research
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UniProt/Swiss-Prot activities at the SIB are supported by the Swiss Federal Government through the Federal Office of Education and Science. ...
ACKNOWLEDGEMENTS UniProt is mainly supported by the National Institutes of Health (NIH) grant 1 U01 HG02712-01. ...
In 2002, the Swiss-Prot + TrEMBL groups at the SIB (Swiss Institute of Bioinformatics) and EBI (European Bioinformatics Institute) and the PIR (Protein Information Resource) group at Georgetown University ...
doi:10.1093/nar/gki070
pmid:15608167
pmcid:PMC540024
fatcat:iqjosikdt5epfo6inmhb5uuiyy
The Universal Protein Resource (UniProt)
2007
Nucleic Acids Research
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The primary mission of UniProt is to support biological research by maintaining a stable, comprehensive, fully classified, richly and accurately annotated protein sequence knowledgebase, with extensive ...
cross-references and querying interfaces freely accessible to the scientific community. ...
Classification Database
UCSC
University of California Santa Cruz
Genome Browser
XenBase
Xenopus laevis and tropicalis biology
and genomics resource
Controlled vocabularies
Controlled vocabularies ...
doi:10.1093/nar/gkm895
pmid:18045787
pmcid:PMC2238893
fatcat:pbq7vsuwtfafzco3f5dcfipvba
The Universal Protein Resource (UniProt)
2007
Nucleic Acids Research
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The Universal Protein Resource (UniProt) provides a stable, comprehensive, freely accessible, central resource on protein sequences and functional annotation. ...
The UniProt Consortium is a collaboration between the European Bioinformatics Institute (EBI), the Protein Information Resource (PIR) and the Swiss Institute of Bioinformatics (SIB). ...
ACKNOWLEDGEMENTS UniProt is mainly supported by the National Institutes of Health (NIH) grant 2 U01 HG02712-05. ...
doi:10.1093/nar/gkl929
pmid:17142230
pmcid:PMC1669721
fatcat:3doko4bysfhmzddimueyp2tj3y
The Universal Protein Resource (UniProt) 2009
2009
Nucleic Acids Research
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UniProt is the central resource for storing and interconnecting information from large and disparate sources, and the most comprehensive catalogue of protein sequence and functional annotation. ...
The additional bibliography is directly linked from the protein entry view on the UniProt website. ...
doi:10.1093/nar/gkn664
pmid:18836194
pmcid:PMC2686606
fatcat:4nz73vlhq5f7fbcyreyxbtse6a
The Universal Protein Resource (UniProt) in 2010
2009
Nucleic Acids Research
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The primary mission of UniProt is to support biological research by maintaining a stable, comprehensive, fully classified, richly and accurately annotated protein sequence knowledgebase, with extensive ...
cross-references and querying interfaces freely accessible to the scientific community. ...
Additional support for the EBI's involvement in UniProt comes from the European Commission contract SLING grant ...
doi:10.1093/nar/gkp846
pmid:19843607
pmcid:PMC2808944
fatcat:zzpkffi7h5aipaogu36t35y77q
Activities at the Universal Protein Resource (UniProt)
2013
Nucleic Acids Research
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human and mouse transcription factors by the Systems Biology team at the Norwegian University of Science and Technology (NTNU). ...
UniProtKB has >140 cross-references to other resources. Some notable additions in the last year are GeneWiki (23) and the Protein Ontology (24) . ...
doi:10.1093/nar/gkt1140
pmid:24253303
pmcid:PMC3965022
fatcat:ymvqbpyhizafba7upcn222a6ty
The Universal Protein Resource (UniProt): an expanding universe of protein information
2006
Nucleic Acids Research
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The Universal Protein Resource (UniProt) provides a central resource on protein sequences and functional annotation with three database components, each addressing a key need in protein bioinformatics. ...
Finally, the UniProt Archive (UniParc) stores all publicly available protein sequences, containing the history of sequence data with links to the source databases. ...
ACKNOWLEDGEMENTS UniProt is mainly supported by the National Institutes of Health (NIH) grant 1 U01 HG02712-01. ...
doi:10.1093/nar/gkj161
pmid:16381842
pmcid:PMC1347523
fatcat:6xrpacost5entptndstyr7gnry
Reorganizing the protein space at the Universal Protein Resource (UniProt)
2011
Nucleic Acids Research
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The mission of UniProt is to support biological research by providing a freely accessible, stable, comprehensive, fully classified, richly and accurately annotated protein sequence knowledgebase, with ...
UniProt is comprised of four major components, each optimized for different uses: the UniProt Archive, the UniProt Knowledgebase, the UniProt Reference Clusters and the UniProt Metagenomic and Environmental ...
The UniProt Archive (UniParc) (1) is a comprehensive sequence repository, reflecting the history of all protein sequences. ...
doi:10.1093/nar/gkr981
pmid:22102590
pmcid:PMC3245120
fatcat:tpdi3er7yrdk7me7g3xmy6n3wy
Update on activities at the Universal Protein Resource (UniProt) in 2013
2012
Nucleic Acids Research
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INTRODUCTION The UniProt's goal is to provide the most comprehensive resource for protein sequence and functional annotation. ...
Altogether, the UniProt supplied automatic annotation pipelines provide 42.5 million annotations to >14 million proteins. ...
doi:10.1093/nar/gks1068
pmid:23161681
pmcid:PMC3531094
fatcat:pfzlr46jqfdlvfjtjlznfmkqsm
UniProt archive
2004
Bioinformatics
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UniProt Archive (UniParc) is the most comprehensive, non-redundant protein sequence database available. Its protein sequences are retrieved from predominant, publicly accessible resources. ...
When proteins are loaded into the database, database cross-references are created to link them to the origins of the sequences. ...
INTRODUCTION Universal Protein Knowledgebase (UniProt) is a central database of protein sequences and functions created by joining the information in SWISS-PROT (Boeckmann et al., 2003) , TrEMBL (Boeckmann ...
doi:10.1093/bioinformatics/bth191
pmid:15044231
fatcat:iz22xro7efb33aadhqfagnpigm
Ongoing and future developments at the Universal Protein Resource
2010
Nucleic Acids Research
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INTRODUCTION Universal Protein Resource (UniProt) strives to provide a centralized repository of protein sequences with comprehensive coverage and a systematic approach to protein annotation, incorporating ...
The additional bibliography is directly linked from the protein entry view on the UniProt web site. ...
doi:10.1093/nar/gkq1020
pmid:21051339
pmcid:PMC3013648
fatcat:vhmcewdzlrfndn3fmtafewqbxa
UniProt Protein Knowledgebase
[chapter]
2017
Msphere
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The Universal Protein Resource (UniProt) is a freely available comprehensive resource for protein sequence and annotation data. ...
UniProt is a collaboration between the European Bioinformatics Institute (EMBL-EBI), the Swiss Institute of Bioinformatics (SIB), and the Protein Information Resource (PIR). ...
Acknowledgments This work was supported by grant U41HG007822 from the National Institutes of Health. ...
doi:10.1007/978-1-4939-6783-4_2
pmid:28150232
pmcid:PMC5565770
fatcat:sem3wywevbcancpfdfx3lvpqse
Searching and Navigating UniProt Databases
2015
Current Protocols in Bioinformatics
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The Universal Protein Resource (UniProt) is a comprehensive resource for protein sequence and annotation data. ...
The key UniProt datasets are the UniProt Knowledgebase (UniProtKB), the UniProt Reference Clusters (UniRef) and the UniProt Archive (UniParc) and protein sets for completely sequenced genomes (Proteomes ...
Acknowledgments This work was supported by the National Institutes of Health [U41HG006104, U41HG007822, U41HG002273, R01GM080646, G08LM010720, P20GM103446]; British Heart Foundation [RG/13/5/30112]; Parkinson's ...
doi:10.1002/0471250953.bi0127s50
pmid:26088053
pmcid:PMC4522465
fatcat:o2ggn5ojxvaajfkymbfhifi7vi
Xenopus and Zebrafish Annotation in the UniProt Knowledgebase (UniProtKB)
2009
Nature Precedings
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Protein Information Resource (PIR) • Xenopus laevis (African clawed frog) and Danio rerio (zebrafish) are both model organisms in the laboratory, as they are easy to accommodate and can produce large numbers ...
the zebrafish genome in 2001.The extensive similarity between the zebrafish and human genomes means many human developmental and disease genes have counterparts in the zebrafish. ...
Introduction to UniProt • UniProt (Universal Protein Resource: http://www.uniprot.org) provides a central resource of protein sequences with functional annotation. ...
doi:10.1038/npre.2009.3153.1
fatcat:d36olesojzc2lht2c3thuocte4
UniProt: the Universal Protein knowledgebase
2004
Nucleic Acids Research
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ACKNOWLEDGEMENTS UniProt is supported mainly by the National Institutes of Health (NIH) grant 1 U01 HG02712-01. ...
Minor support for the EBI's involvement in UniProt comes from the two European Union contracts BioBabel (QLRT-2000-00981) and TEMBLOR (QLRI-2001-00015) and from the NIH grant 1R01HGO2273-01. ...
In 2002, the Swiss-Prot + TrEMBL group at the Swiss Institute of Bioinformatics (SIB) and European Bioinformatics Institute (EBI) and the Protein Information Resource (PIR) group at the Georgetown University ...
doi:10.1093/nar/gkh131
pmid:14681372
pmcid:PMC308865
fatcat:q6fuc2kgujar5drblzqtcbvpou
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