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The UCLA multimodal connectivity database: a web-based platform for brain connectivity matrix sharing and analysis
2012
Frontiers in Neuroinformatics
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Here we introduce the UCLA Multimodal Connectivity Database (http://umcd.humanconnectomeproject.org), an openly available website for brain network analysis and data sharing. ...
Brain connectomics research has rapidly expanded using functional MRI (fMRI) and diffusion-weighted MRI (dwMRI). A common product of these varied analyses is a connectivity matrix (CM). ...
The work was supported by NIH NRSA F31AG035438-01 to Jesse A. Brown and NIH Neuroscience Blueprint HHSN271200800035C via NIDA. ...
doi:10.3389/fninf.2012.00028
pmid:23226127
pmcid:PMC3508475
fatcat:uxm7gstvpjd6xb7twsjk53s6ju
Connected brains and minds—The UMCD repository for brain connectivity matrices
2016
NeuroImage
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We describe the USC Multimodal Connectivity Database (http:// umcd.humanconnectomeproject.org ), an interactive web-based platform for brain connectivity matrix sharing and analysis. ...
The site enables users to download connectivity matrices shared by other users, upload matrices from their own published studies, or select a specific matrix and perform a realtime graph theory-based analysis ...
The USC Multimodal Connectivity Database (http://umcd.humanconnectomeproject.org; formerly the UCLA Multimodal Connectivity Database; (Brown et al., 2012) ) is an open repository for CMs. ...
doi:10.1016/j.neuroimage.2015.08.043
pmid:26311606
pmcid:PMC4972184
fatcat:krpyusi4ezaqjj6qtbkp6e6apa
Multimodal Imaging Brain Connectivity Analysis (MIBCA) toolbox
2015
PeerJ
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Brown JA, Rudie JD, Bandrowski A, Van Horn JD, Bookheimer SY. 2012. The ucla multimodal connectivity database: a web-based platform for brain connectivity matrix sharing and analysis. ...
Thus, we have developed the Multimodal Imaging Brain Connectivity Analysis (MIBCA) toolbox with the goal of diminishing time waste in data processing and to allow an innovative and comprehensive approach ...
The UCLA Multimodal Connectivity Database (UMCD) (Brown et al., 2012) : The UMCD is a web platform for connectivity matrix data repository, sharing and analysis. ...
doi:10.7717/peerj.1078
pmid:26207191
pmcid:PMC4511822
fatcat:dtsbgeegqvc4ze244jcvrwcqpy
The Digital Fish Library: Using MRI to Digitize, Database, and Document the Morphological Diversity of Fish
2012
PLoS ONE
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We have imaged and uploaded MRI data for over 300 marine and freshwater species, developed a data archival and retrieval system with a web-based image analysis and visualization tool, and integrated these ...
an efficient method for online storage and sharing of this imaging data. ...
Acknowledgments We are grateful to the CFMRI for providing access to their high-field MRI scanners and Cameron Perry, Miriam Scadeng (UCSD), Dexter Walpole The Digital Fish Library PLoS ONE | www.plosone.org ...
doi:10.1371/journal.pone.0034499
pmid:22493695
pmcid:PMC3321017
fatcat:syy2qimqnral7gvovozvfnex6y
Integration and segregation in Autism Spectrum Disorders modulated by age, disease, and interaction: A graph-theoretic study of intrinsic functional connectivity
[article]
2018
bioRxiv
pre-print
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We have analyzed the resting-state functional magnetic resonance imaging (rs-fMRI) and diffusion tensor imaging (DTI) data from the University of California Los Angeles (UCLA) multimodal connectivity database ...
Further, the graph-theoretic analysis showed that there is a significant effect of age and disease on modularity, clustering coefficient, and local efficiency. ...
., Bandrowski, A., Van Horn, J. D. & Bookheimer, S. Y. The UCLA multimodal connectivity database: a web-based platform for brain connectivity matrix sharing and analysis. ...
doi:10.1101/278846
fatcat:hzdk5tdjsjcbhktrlxvbcbq35i
Big data sharing and analysis to advance research in post-traumatic epilepsy
2018
Neurobiology of Disease
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We describe the infrastructure and functionality for a centralized preclinical and clinical data repository and analytic platform to support importing heterogeneous multi-modal data, automatically and ...
Highlights: We have created the infrastructure for a centralized data repository for multi-modal data Innovative image and electrophysiology processing methods have been applied Novel analytic tools ...
Diffusion tractography is used to determine connectivity properties (WM bundle length, connectivity density, and FA) and each subject's weighted connectivity matrix. ...
doi:10.1016/j.nbd.2018.05.026
pmid:29864492
pmcid:PMC6274619
fatcat:hgn4qtkzhjag7oseeeqhz72pl4
The Human Connectome Project's neuroimaging approach
2016
Nature Neuroscience
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analyze data using neurobiologically accurate brain parcellations; and (7) share published data via user-friendly databases. ...
This paper presents an integrated approach to data acquisition, analysis, and sharing that builds upon recent advances, particularly from the Human Connectome Project (HCP). ...
We thank the other investigators and staff members of the Human Connectome Project consortium for invaluable contributions to data acquisition, analysis, and sharing. ...
doi:10.1038/nn.4361
pmid:27571196
fatcat:wwg4h7gmw5eshc5bc3zsmt6zmy
iCAVE: an open source tool for immersive 3D visualization of complex biomolecular interaction networks
[article]
2016
bioRxiv
pre-print
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We present an open-source software platform, interactome-CAVE, (iCAVE), that leverages stereoscopic (3D) immersive display technologies for visualizing complex biomolecular interaction networks. ...
in addition to extensions of known 2D network layout, clustering and edge-bundling algorithms to the 3D space, to assist in understanding the underlying structures in large, dense, layered or clustered ...
Shared nearest neighbors: A similarity metric based on the sharing of nearest neighbors between any two nodes. ...
doi:10.1101/061374
fatcat:wu5bs6lrwfb4nczmi2iqha3rbq
Network modeling of single-cell omics data: challenges, opportunities, and progresses
2019
Emerging Topics in Life Sciences
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Gene regulatory network modeling has been used as a powerful approach to elucidate the complex molecular interactions underlying biological processes and systems, yet its application in single-cell omics ...
Finally, we outline the remaining gaps in single-cell gene network modeling and the outlooks of the field moving forward. ...
Has a web UI. ...
doi:10.1042/etls20180176
pmid:32270049
pmcid:PMC7141415
fatcat:x47pn56f6fbhxkzb3vcze3cuuq
Topics and trends in artificial intelligence assisted human brain research
2020
PLoS ONE
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This paper combines the structural topic modeling (STM) with the bibliometric analysis to automatically identify prominent research topics from the large-scale, unstructured text of AI-assisted human brain ...
Artificial intelligence (AI) assisted human brain research is a dynamic interdisciplinary field with great interest, rich literature, and huge diversity. ...
Many online, interactive platforms have become available for brain network analysis, e.g., the UCLA Multimodal Connectivity Database [90] . ...
doi:10.1371/journal.pone.0231192
pmid:32251489
fatcat:fopwroopq5germh5khwevx3uhq
Monitoring the Application
[chapter]
2015
Beginning Amazon Web Services with Node.js
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During the next few months we are doing field trials that will help us test if these ideas are practically feasible in adapting communication protocols to improve communication between gliders and shore ...
We are currently working on using our classifier to make communication decisions on when to transmit files based upon wave-parameters. ...
An Adobe Flash user interface connects to Python-based support components for socket-based access to the database and the tablet!s GPS. ...
doi:10.1007/978-1-4842-0653-9_7
fatcat:b6s3wv3jcvf6xiniouokdhwtba
Modeling & Analysis
2003
NeuroImage
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maps of CSF, PVL and SCL were computed for the categories (i) whole database; (ii) gender; (iii) age-intervals for the whole data base and (iv) age-intervals for each gender. ...
Abstract Constrained Principal Component Analysis (CPCA) is introduced as a correlation-based method of identifying (a) connectivity between neuronal structures and (b) functional interactions between ...
We use a wavelet basis function set (e.g. Daubechies 4, (2)) to generate the design matrix for the observation level. ...
doi:10.1016/s1053-8119(05)70006-9
fatcat:zff2suxcofbxvetfrwfwcxi3zm
A New Approach to Network Decomposition Problems
[chapter]
2017
Springer Proceedings in Mathematics & Statistics
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In addition to an overall evaluation of the interest, scientific quality, and timeliness of each proposal at the hands of the publisher, individual contributions are all refereed to the high quality standards ...
Thus, this series provides the research community with well-edited, authoritative reports on developments in the most exciting areas of mathematical and statistical research today. ...
Communication is based on demonstrations and personal engagement that make the buying process highly tangible and multisensory for consumers [7]. ...
doi:10.1007/978-3-319-56829-4_10
fatcat:oll4dy6vcjhlta2j65qpf4tnra
Poster Session I
2013
Neuropsychopharmacology
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KYNA-based animal model of SZ; and (3) the relative roles of a7nAChRs vs NMDA receptors in performance in the DNMTP task.To this end, we determined, in a separate group of intact animals, the effects ...
A significant contributor to cognitive impairments seen in SZ may be the elevated levels of kynurenic acid (KYNA), observed in the brains of patients with SZ. ...
Slifstein, A. Abi-Dargham, and S. Kapur, Arch Gen Psychiatry 69, 776 (2012). 2 ...
doi:10.1038/npp.2013.279
fatcat:54ipecxjarcvljrvn5fgtgif5u
XI Convegno Nazionale: Firenze, 17–19 marzo 2016, Palazzo dei Congressi – Villa Vittoria
2016
Journal of Alzheimer's Disease
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Furthermore, in PD-ICD, the lack of increased functional connectivity within the sensorimotor-network together with their cortical thinning in the same regions, suggest a greater disconnection among these ...
Conclusions: Relative to PD no-ICD, PD-ICD patients are characterized by a more severe involvement of frontal, meso-limbic and motor circuits. ...
Conclusions: The role of genomic SNPs still represented a challenge for the genetics of SAD, having an effects in increasing the risk for SAD, if any, much smaller than those of APOE. ...
doi:10.3233/jad-169001
pmid:27232541
fatcat:ld4yvhhabbdrzeok5ghvddevze
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