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smartAPI: Towards a More Intelligent Network of Web APIs [chapter]

Amrapali Zaveri, Shima Dastgheib, Chunlei Wu, Trish Whetzel, Ruben Verborgh, Paul Avillach, Gabor Korodi, Raymond Terryn, Kathleen Jagodnik, Pedro Assis, Michel Dumontier
2017 Lecture Notes in Computer Science  
We present the implementation of the smartAPI ecosystem to facilitate the creation of FAIR (Findable, Accessible, Interoperable, Reusable) APIs.  ...  Acknowledgments The smartAPI pilot project was funded as a supplement to CEDAR (U41HG000131521). MyGene.info and MyVariant.info are supported by U01HG008473 (from NHGRI).  ...  The LINCS Data Portal is supported by grant U54HL127624 awarded by the National Heart, Lung, and Blood Institute through funds provided by the trans-NIH LINCS Program http://www.lincsproject.org/ and the  ... 
doi:10.1007/978-3-319-58451-5_11 fatcat:5jgpy5medjbs3n26ojfrjkf7c4

Developing a framework for digital objects in the Big Data to Knowledge (BD2K) commons: Report from the Commons Framework Pilots workshop

Kathleen M. Jagodnik, Simon Koplev, Sherry L. Jenkins, Lucila Ohno-Machado, Benedict Paten, Stephan C. Schurer, Michel Dumontier, Ruben Verborgh, Alex Bui, Peipei Ping, Neil J. McKenna, Ravi Madduri (+2 others)
2017 Journal of Biomedical Informatics  
These are just some elements of a complex ecosystem that needs to be built to support the rapid accumulation of these data.  ...  While such data hold significant promise for accelerating discovery, their use entails many challenges including: the need for adequate computational infrastructure, secure processes for data sharing and  ...  A complementary effort led by CEDAR in collaboration with the HeartBD2K center aims to develop smartAPI ( Table 2 , API category), a coordinated facility for the intelligent annotation of web-based APIs  ... 
doi:10.1016/j.jbi.2017.05.006 pmid:28501646 pmcid:PMC5545976 fatcat:akpykof6sfeehcd2jhegji2pmi

D2.9 Second reference implementation of the data repositories features and client application

Claudia Behnke, Kees Burger, Pekka Järveläinen, Yann Le Franc, Vyacheslav Tykhonov, Jessica Parland-Von Essen, Robert Huber, Hervé L'Hours, Rob Hooft
2022 Zenodo  
It demonstrates how the requirements for FAIR enhancing repositories (Behnke et al., 2020) are put into practice by building a prototype based on the DCAT2 data model.  ...  This document is the third report from Task 2.3 of the FAIRsFAIR project.  ...  the API and the creation of a SmartAPI description for the repository API, 3. the triggering of the smartHarvester service which will collect the repository metadata using the SmartAPI descriptio, 4.  ... 
doi:10.5281/zenodo.6699160 fatcat:iu5gp2o6sjd7lk3ixsh52x4paq

D2.9 Second reference implementation of the data repositories features and client application

Claudia Behnke, Kees Burger, Pekka Järveläinen, Yann Le Franc, Vyacheslav Tykhonov, Jessica Parland-Von Essen
2022 Zenodo  
It demonstrates how the requirements for FAIR enhancing repositories (Behnke et al., 2020) are put into practice by building a prototype based on the DCAT2 data model.  ...  This document is the third report from Task 2.3 of the FAIRsFAIR project.  ...  the API and the creation of a SmartAPI description for the repository API, 3. the triggering of the smartHarvester service which will collect the repository metadata using the SmartAPI descriptio, 4.  ... 
doi:10.5281/zenodo.6204056 fatcat:ila4kv6m5jhkfnqctl5o3ezcve

Automatic Query-Centric API for Routine Access to Linked Data [chapter]

Albert Meroño-Peñuela, Rinke Hoekstra
2017 Lecture Notes in Computer Science  
It generates an OpenAPI compatible API by using parametrized queries shared on the Web.  ...  a single API.  ...  This work was funded by the CLARIAH project of the Dutch Science Foundation (NWO).  ... 
doi:10.1007/978-3-319-68204-4_30 fatcat:eij2z54eczfprlmjlyguk3k3p4

Evaluating FAIR maturity through a scalable, automated, community-governed framework

Mark D. Wilkinson, Michel Dumontier, Susanna-Assunta Sansone, Luiz Olavo Bonino da Silva Santos, Mario Prieto, Dominique Batista, Peter McQuilton, Tobias Kuhn, Philippe Rocca-Serra, Mercѐ Crosas, Erik Schultes
2019 Scientific Data  
The components of the framework are: (1) Maturity Indicators - community-authored specifications that delimit a specific automatically-measurable FAIR behavior; (2) Compliance Tests - small Web apps that  ...  We then illustrate how the output of the Evaluator tool can serve as a roadmap to assist data stewards to incrementally and realistically improve the FAIRness of their resources.  ...  Code Availability Code for the FAIR Evaluator and each compliance test is available in GitHub (https://github.com/FAIRMetrics/ Metrics/tree/master/MetricsEvaluatorCode).  ... 
doi:10.1038/s41597-019-0184-5 pmid:31541130 pmcid:PMC6754447 fatcat:n7c2tst24rbjzkp5jagxnitchu

Evaluating FAIR Maturity Through a Scalable, Automated, Community-Governed Framework [article]

Mark D Wilkinson, Michel Dumontier, Susanna-Assunta Sansone, Luiz Olavo Bonino da Silva Santos, Mario Prieto Godoy, Dominique Batista, Peter McQuilton, Tobias Kuhn, Philippe Rocca-Serra, Mercè Crosas, Erik Schultes
2019 bioRxiv   pre-print
The components of the framework are: (1) Maturity Indicators - community-authored specifications that delimit a specific automatically-measurable FAIR behavior; (2) Compliance Tests - small Web apps that  ...  We then illustrate how the output of the Evaluator tool can serve as a roadmap to assist data stewards to incrementally and realistically improve the FAIRness of their resources.  ...  FAIRsharing to support FAIR evaluations, and tested the framework. TK maintains the GitHub repository of FAIR MIs, and their representation as nanopublications.  ... 
doi:10.1101/649202 fatcat:y25vyuyu5zfddc6v7zn5p4anuq

D2.5 FAIR Semantics Recommendations Second Iteration

Wim Hugo, Yann Le Franc, Gerard Coen, Jessica Parland-von Essen, Luiz Bonino
2020 Zenodo  
This document is the second iteration of recommendations for making semantic artefacts FAIR.  ...  Based on the feedback received there, 17 preliminary recommendations related to one or more of the FAIR principles, and 10 best practice recommendations on semantic artefacts were documented.  ...  A recent extension of the OpenAPI specification, called smartAPI 62 has been proposed to provide semantically annotated API description to make an API FAIR.  ... 
doi:10.5281/zenodo.4314320 fatcat:6rorm7qxrndetpx2otgydsj6fa

ENVRI-FAIR D5.1 Requirement analysis, technology review and gap analysis of environmental RIs

Barbara Magagna, Angeliki Adamaki, Xiaofeng Liao, Riccardo Rabissoni, Zhiming Zhao
2020 Zenodo  
This deliverable introduces the FAIR principles, describes the approach chosen for the FAIRness assessment, gives insights into the assessment results at the project/subdomain level (and for each RI in  ...  The overarching goal of ENVRI-FAIR is for all participating ENVRIs to improve their FAIRness and prepare the connection of their data repositories and services to the European Open Science Cloud (EOSC)  ...  This will lead to FAIR assessed profiles (FIPs), which will allow us to track and visualize the improvement of the ENVRIs FAIRness during the project.  ... 
doi:10.5281/zenodo.3884997 fatcat:rakh6tlqo5az7kcuwmz6a4fszm

D3.5: Open Science Policy Toolkit [article]

Leo Mack, Elli Papadopoulou
2018 Zenodo  
This report provides an overview of the results of the Policy Toolkit research for EOSCpilot.  ...  The Open Science Policy Toolkit is primarily useful for research producing organisations, funders, (research) ministries, and research infrastructures.  ...  Data FAIRport 132 is a set of services that aim to facilitate the implementation of FAIR data. smartAPI 133 is another tool which can be used to build APIs with a higher degree of FAIRness.  ... 
doi:10.5281/zenodo.3387579 fatcat:kmvc5wpbdncvvpixfvfbongedq

Data repository integration and ORDM/FAIR compliance guidelines [article]

Branko Marović, Eleni Toli, Electra Sifakaki, Elli Papadopoulou, Vladimir Otašević, Milica Ševkušić, Biljana Kosanović
2020 Zenodo  
This document delivers the results of the analysis of guidelines for open science – more specifically, a description of the approach to ORDM and FAIR for 15 NI4OS-Europe partner countries, by observing  ...  the relevant existing guidelines on data repository integration, ORDM and FAIR on the global level.  ...  how to use RO-Crate specifications, http://www.researchobject.org/specifications/  SmartAPI -Community-based extension of the OpenAPI specification, which aims to improve the FAIRness of APIs, http:/  ... 
doi:10.5281/zenodo.3736150 fatcat:y5xdahr7tzaz5mpeyisgr4f5aq