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The ReproGenomics Viewer: an integrative cross-species toolbox for the reproductive science community

Thomas A. Darde, Olivier Sallou, Emmanuelle Becker, Bertrand Evrard, Cyril Monjeaud, Yvan Le Bras, Bernard Jégou, Olivier Collin, Antoine D. Rolland, Frédéric Chalmel
2015 Nucleic Acids Research  

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We report the development of the ReproGenomics Viewer (RGV), a multi-and cross-species working environment for the visualization, mining and comparison of published omics data sets for the reproductive  ...  science community.  ...  We acknowledge the GenOuest bioinformatics facility for hosting the software. We also thank Dominique Mahe Poiron, Nathalie Dejucq-Rainsford and Nathalie Rioux-Leclerq for providing the human samples.  ... 
doi:10.1093/nar/gkv345 pmid:25883147 pmcid:PMC4489245 fatcat:zmoatmbgszddtepilcytxsv3my
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Thomas A. Darde, Olivier Sallou, Emmanuelle Becker, Bertrand Evrard, Cyril Monjeaud, Yvan Le Bras, Bernard Jégou, Olivier Collin, Antoine D. Rolland, Frédéric Chalmel. "The ReproGenomics Viewer: an integrative cross-species toolbox for the reproductive science community." Nucleic Acids Research 43.W1 (2015) W109-W116

New transcriptomic tools to understand testis development and functions

Estelle Lecluze, Bernard Jégou, Antoine D. Rolland, Frédéric Chalmel
2018 Molecular and Cellular Endocrinology  

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10 The testis plays a central role in the male reproductive system -secreting several hormones including male steroids and producing male gametes.  ...  The testicular transcriptome displays the highest levels of complexity and specificity across all tissues in a wide range of species.  ...  Sadia Khan for critical reading of the manuscript. We also thank the  ... 
doi:10.1016/j.mce.2018.02.019 pmid:29501799 fatcat:zr3jkkpfs5hpbc3ugh55sbeo7y
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Estelle Lecluze, Bernard Jégou, Antoine D. Rolland, Frédéric Chalmel. "New transcriptomic tools to understand testis development and functions." Molecular and Cellular Endocrinology (2018) 47-59

Potential for virus endogenization in humans through testicular germ cell infection: the case of HIV [article]

Dominique Mahé, Giulia Matusali, Claire Deleage, Raquel Alvarenga, Anne-Pascale Satie, Amelie Paggliuzza, Romain Mathieu, Sylvain Lavoué, Bernard Jégou, Luiz de Franca, Nicolas Chomont, Laurent Houzet (+2 others)
2020 bioRxiv   pre-print

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https://web.archive.org/web/20200711143559/https://www.biorxiv.org/content/biorxiv/early/2020/06/07/2020.06.04.135657.full.pdf

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This could represent a way for this contemporary virus to integrate our germline and become endogenous in the future, as happened during human evolution for a number of viruses.  ...  Viruses have colonized the germ line of our ancestors at several occasions during evolution, leading to the integration in the human genome of viral sequences from over 30 retroviral groups and a few non-retroviruses  ...  The 862 ReproGenomics Viewer: An integrative cross-species toolbox for the reproductive 863 science community. Nucleic Acids Res. 2015;43: W109-W116. 864 doi:10.1093/nar/gkv345 865 86.  ... 
doi:10.1101/2020.06.04.135657 fatcat:52tjqthkr5h5hdp22stwzcgkcm
Citation

Dominique Mahé, Giulia Matusali, Claire Deleage, Raquel Alvarenga, Anne-Pascale Satie, Amelie Paggliuzza, Romain Mathieu, Sylvain Lavoué, Bernard Jégou, Luiz de Franca, Nicolas Chomont, Laurent Houzet, Antoine Rolland, Nathalie Dejucq-Rainsford. "Potential for virus endogenization in humans through testicular germ cell infection: the case of HIV." bioRxiv (2020)