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The RNASeq-er API—a gateway to systematically updated analysis of public RNA-seq data
2017
Bioinformatics
Preserved Fulltext
We present a Web service to access the results of a systematically and continually updated standardized alignment as well as gene and exon expression quantification of all public bulk (and in the near ...
Availability and Implementation: The RNASeq-er API can be accessed at ...
the Ensembl and WormBase ParaSite teams for facilitating timely access to the genome references; the ENA Team for their assistance in retrieval the raw RNA-Seq data; and finally to the Samples, Phenotypes ...
doi:10.1093/bioinformatics/btx143
pmid:28369191
pmcid:PMC5870697
fatcat:ild6vn5ll5hcfj4alj5kksj234
recount3: summaries and queries for large-scale RNA-seq expression and splicing
[article]
2021
bioRxiv
pre-print
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We present recount3, a resource consisting of over 750,000 publicly available human and mouse RNA sequencing (RNA-seq) samples uniformly processed by our new Monorail analysis pipeline. ...
Taken together, our tools help biologists maximize the utility of publicly available RNA-seq data, especially to improve their understanding of newly collected data. recount3 is available from http://rna.recount.bio ...
Acknowledgements Funding: CW, BL, KDH, SCJ, FYC, RC, BS, JTL, AN, LCT were supported by R01GM121459 to KDH. CW, RC, BS and BL were supported by R01GM118568 and R35GM139602 to BL. DZ is ...
doi:10.1101/2021.05.21.445138
fatcat:hee4epm6f5dpfmygt5u7yyfwca
Human genome meeting 2016
2016
Human Genomics
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Further, targeted quantitative analysis of a subset of discriminating metabolites using tandem mass spectrometry provided a reliable laboratory method to detect children with ASD. ...
analysis. ...
Acknowledgements Funding for research and development is acknowledged for Project: "Research Oriented Data Management and Analysis" at the Ucar Lab by The Jackson Laboratory, USA. ...
doi:10.1186/s40246-016-0063-5
pmid:27294413
pmcid:PMC4896275
fatcat:ycjj53ixrbauvnusibuz76y7bm
Data Analysis for the COVID-19 Research: Contributions of the German Network of Bioinformatics Infrastructure
2021
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In total, there are 15 projects showing how different de.NBI resources can be used in the analysis of large data sets. ...
Finally, a pre sentation of the federated de.NBI Cloud ...
GALAXY AS A GATEWAY FOR DATA ANALYSIS The European Galaxy platform (https:// usegalaxy.eu) serves as a gateway for data analysis and access to databases for scientists of all disciplines. ...
doi:10.4119/unibi/2950259
fatcat:d5f5slq25vabtieou4pzpbr75e