A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2019; you can also visit the original URL.
The file type is application/pdf.
Filters
The RCSB Protein Data Bank: views of structural biology for basic and applied research and education
2014
Nucleic Acids Research
Preserved Fulltext
Our efforts over the past 2 years focused on enabling a deeper understanding of structural biology and providing new structural views of biology that support both basic and applied research and education ...
The RCSB Protein Data Bank (RCSB PDB, http: //www.rcsb.org) provides access to 3D structures of biological macromolecules and is one of the leading resources in biology and biomedicine worldwide. ...
Peter Troshin contributed the JRonn implementation, used for the protein disorder track of the Protein Feature View. Takanori Nakane developed NDKmol for the RCSB PDB Mobile app. ...
doi:10.1093/nar/gku1214
pmid:25428375
pmcid:PMC4383988
fatcat:ms62oq4lnbep5i7dq2qp4f3hwm
Impact Analysis of "Berman HM et al., (2000), The Protein Data Bank"
2017
RCSB Protein Data Bank
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2018; you can also visit the original URL.
The file type is application/pdf.
In 1998, the Research Collaboratory for Structural Bioinformatics (RCSB) became responsible for the management of the PDB. ...
Research Data Science & Evaluation Impact of the Protein Data Bank on the Research Community
Research Data Science & Evaluation Impact of the Protein Data Bank on the Research Community The PDB has ...
Research Data Science & Evaluation
Impact of the Protein Data Bank on the Research Community What is the Threshold for "Highly Cited"? ...
doi:10.2210/rcsb_pdb/pdb-cit-anal-2017
fatcat:odfaoxnry5bglb7eij5vhtcnwy
RCSB Protein Data Bank: sustaining a living digital data resource that enables breakthroughs in scientific research and biomedical education
2018
Acta Crystallographica Section A: Foundations and Advances
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2019; you can also visit the original URL.
The file type is application/pdf.
Studies of website usage, bibliometrics, and economics demonstrate the powerful impact of the PDB data on basic and applied research, clinical medicine, education, and the economy. ...
T he Protein Data Bank (PDB) was established in 1971 as the first open-access digital data resource in biology. ...
Studies of website usage, bibliometrics, and economics demonstrate the powerful impact of the PDB data on basic and applied research, clinical medicine, education, and the economy. ...
doi:10.1107/s0108767318098811
fatcat:wrqm2gm6wzhl3olcu4323oybtu
RCSB Protein Data Bank tools for 3D structure-guided cancer research: human papillomavirus (HPV) case study
2020
Oncogene
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2020; you can also visit the original URL.
The file type is application/pdf.
The US Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) provides an integrated portal to the PDB archive that streamlines access for millions of worldwide PDB data consumers ...
Herein, we review online resources made available free of charge by the RCSB PDB to basic and applied researchers, healthcare providers, educators and their students, patients and their families, and the ...
Steven Zheng and Shridar Ganesan and other members of the Rutgers Cancer Institute of New Jersey, and contributions from all members of the RCSB PDB and our wwPDB partners around the world. ...
doi:10.1038/s41388-020-01461-2
pmid:32939013
pmcid:PMC7581513
fatcat:bhnkikcx6rbxjkqgqzmdzzthmq
RCSB Protein Data Bank: Sustaining a living digital data resource that enables breakthroughs in scientific research and biomedical education
2017
Protein Science
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2020; you can also visit the original URL.
The file type is application/pdf.
The Protein Data Bank (PDB) is one of two archival resources for experimental data central to biomedical research and education worldwide (the other key Primary Data Archive in biology being the International ...
RCSB PDB resources are described in detail together with metrics documenting the impact of access to PDB data on basic and applied research, clinical medicine, education, and the economy. ...
The PDB is among the most heavily used digital data resources in basic and applied biomedical research and education. ...
doi:10.1002/pro.3331
pmid:29067736
pmcid:PMC5734314
fatcat:7jdrdkkw6ffffeu2xpsqp3le4i
PDBe: Protein Data Bank in Europe
2013
Nucleic Acids Research
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2017; you can also visit the original URL.
The file type is application/pdf.
of macromolecular structure data through the single global archive for such data, the PDB. ...
The Protein Data Bank in Europe (pdbe.org) is a founding member of the Worldwide PDB consortium (wwPDB; wwpdb.org) and as such is actively engaged in the deposition, annotation, remediation and dissemination ...
They are also particularly indebted to the structural biology community for depositing the fruit of their work in the PDB, BMRB and EMDB archives. Conflict of interest statement. None declared. ...
doi:10.1093/nar/gkt1180
pmid:24288376
pmcid:PMC3965016
fatcat:rv2cpebl5ffzbdppo654oahfly
RCSB Protein Data Bank: powerful new tools for exploring 3D structures of biological macromolecules for basic and applied research and education in fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences
2020
Nucleic Acids Research
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2020; you can also visit the original URL.
The file type is application/pdf.
The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB), the US data center for the global PDB archive and a founding member of the Worldwide Protein Data Bank partnership ...
PDB data consumers accessing our web portals include researchers, educators and students studying fundamental biology, biomedicine, biotechnology, bioengineering and energy sciences. ...
ACKNOWLEDGEMENTS RCSB PDB is a member of the Worldwide Protein Data Bank (wwPDB.org). ...
doi:10.1093/nar/gkaa1038
pmid:33211854
pmcid:PMC7779003
fatcat:dkqo54quqjgovp7y4v67b635zu
The RCSB PDB "Molecule of the Month": Inspiring a Molecular View of Biology
2015
PLoS Biology
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2019; you can also visit the original URL.
The file type is application/pdf.
The Research Collaboratory for Structural Bioinformatics (RCSB) Molecule of the Month series provides a curated introduction to the 3-D biomolecular structures available in the Protein Data Bank archive ...
and the tools that are available at the RCSB website for accessing and exploring them. ...
Jesse Woo, for their support in organizing and presenting this project. ...
doi:10.1371/journal.pbio.1002140
pmid:25942442
pmcid:PMC4420264
fatcat:mq3g6lso4jcpvlvc6empbdfkwi
Protein Data Bank Japan (PDBj): maintaining a structural data archive and resource description framework format
2011
Nucleic Acids Research
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2019; you can also visit the original URL.
The file type is application/pdf.
The Protein Data Bank Japan (PDBj, http://pdbj.org) is a member of the worldwide Protein Data Bank (wwPDB) and accepts and processes the deposited data of experimentally determined macromolecular structures ...
While maintaining the archive in collaboration with other wwPDB partners, PDBj also provides a wide range of services and tools for analyzing structures and functions of proteins, which are summarized ...
FUNDING Funding for open access charge: National Bioscience Database Center, the Japan Science and Technology Agency. Conflict of interest statement. None declared. ...
doi:10.1093/nar/gkr811
pmid:21976737
pmcid:PMC3245181
fatcat:rgdsfxvkfvhgnnpag3funh52pu
Promoting a structural view of biology for varied audiences: an overview of RCSB PDB resources and experiences
2010
Journal of Applied Crystallography
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2017; you can also visit the original URL.
The file type is application/pdf.
The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) supports scientific research and education worldwide by providing an essential resource of information on biomolecular ...
Through these efforts the RCSB PDB aims to enable optimal use of structural data by researchers, educators and students designing and understanding experiments in biology, chemistry and medicine, and by ...
It is funded by the NSF, NIGMS, DOE, NLM, NCI, NINDS and NIDDK (grant No. DBI0829586). We thank all the RCSB PDB staff for their enthusiasm and participation in education and outreach activities. ...
doi:10.1107/s002188981002371x
pmid:20877496
pmcid:PMC2943739
fatcat:tumibltfefcxzomabkgef2vkmq
Impact of structural biologists and the Protein Data Bank on small-molecule drug discovery and development
2021
Journal of Biological Chemistry
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2022; you can also visit the original URL.
The file type is application/pdf.
Finally, the author gratefully acknowledges contributions to the success of the PDB archive made by all members of RCSB PDB (past and present) and our Worldwide Protein Data Bank partners (Protein Data ...
Bank in Europe, Protein Data Bank Japan, Biological Magnetic Resonance Bank, and Electron Microscopy Data Bank). ...
Availability of the Protein Data Bank archive helps transform 3D structure data to knowledge, benefiting basic and applied research and education. ...
doi:10.1016/j.jbc.2021.100559
pmid:33744282
fatcat:7aumkkjssrbn3mmx5k4jwvenoa
Worldwide Protein Data Bank biocuration supporting open access to high-quality 3D structural biology data
2018
Database: The Journal of Biological Databases and Curation
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2019; you can also visit the original URL.
The file type is application/pdf.
Worldwide Protein Data Bank biocuration supporting open access to high-quality 3D structural biology data. ...
Abstract The Protein Data Bank (PDB) is the single global repository for experimentally determined 3D structures of biological macromolecules and their complexes with ligands. ...
Acknowledgements The authors thank all the members of the worldwide Protein Data Bank (wwPDB) for their support and feedback, Kim Henrick for his direction to the PDB in Europe (PDBe) biocuration team ...
doi:10.1093/database/bay002
pmid:29688351
pmcid:PMC5804564
fatcat:pymncvy65zghjgdhleavnz7oce
New tools and functions in data-out activities at Protein Data Bank Japan (PDBj)
2017
Protein Science
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2020; you can also visit the original URL.
The file type is application/pdf.
The Protein Data Bank Japan (PDBj), a member of the worldwide Protein Data Bank (wwPDB), accepts and processes the deposited data of experimentally determined biological macromolecular structures. ...
surfaces, the extensions of the Omokage search for molecular shape similarity, and the integration of PDBj and BMRB searches. ...
years, by adding newly determined structures every week. 11 The database has been widely used for various types of research, and is also useful for education, by providing concrete views of biomolecules ...
doi:10.1002/pro.3273
pmid:28815765
pmcid:PMC5734392
fatcat:7ttn55ucxvcjfjkmivznvmet34
Crystallography and Databases
2017
Data Science Journal
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2018; you can also visit the original URL.
The file type is application/pdf.
A session at SciDataCon2016 gave an overview of the largest extant crystallographic databases and their current activities and plans for the future. ...
Crystallographic databases have existed as electronic resources for over 50 years, and have provided comprehensive archives of crystal structures of inorganic, organic, metal-organic and biological macromolecular ...
The RCSB PDB is supported by the National Science Foundation (DBI 1338415), National Institutes of Health, and the Department of Energy; PDBe by the Wellcome Trust, BBSRC, MRC, EU, CCP4, and EMBL-EBI; ...
doi:10.5334/dsj-2017-038
fatcat:d7adzhjqxvf4zfcfzgaen2qf3e
Molecular Illustration in Research and Education: Past, Present, and Future
2018
Journal of Molecular Biology
Preserved Fulltext
A copy of this work was available on the public web and has been preserved in the Wayback Machine. The capture dates from 2020; you can also visit the original URL.
The file type is application/pdf.
Building on decades of experience in design, best practices resources are available to guide creation of illustrations that are effective for research and education communities. ...
2D illustration is used extensively to study and disseminate the results of structural molecular biology. ...
US Department of Energy (DSG) and SIG 13/14 from the Social Sciences and Humanities Research Council (SSHRC) (JJ). ...
doi:10.1016/j.jmb.2018.04.043
pmid:29752966
pmcid:PMC6186494
fatcat:r4zme3rq7rfz7cnfe6nayyl2aq
« Previous
Showing results 1 — 15 out of 265 results