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A Pattern-Based Ontology for Describing Publishing Workflows

Aldo Gangemi, Silvio Peroni, David M. Shotton, Fabio Vitali
2014 International Semantic Web Conference  
In this paper we introduce the Publishing Workflow Ontology (PWO), i.e., an OWL 2 DL ontology for the description of generic workflows that is particularly suitable for formalising typical publishing processes  ...  We support the presentation with a discussion of all the ontology design patterns that have been reused for modelling the main characteristics of workflows.  ...  PWO: the Publishing Workflow Ontology In order to accommodate workflow requirements, we developed the Publishing Workflow Ontology 25 (PWO), which is entirely based on the ontology patterns introduced  ... 
dblp:conf/semweb/GangemiPSV14 fatcat:geylspyxe5a5jjfwrimdfh25le

LDWPO A Lightweight Ontology for Linked Data Management

Sandro Rautenberg, Ivan Ermilov, Edgard Marx, Sören Auer
2016 Joint Seminar on Ontology Research in Brazil / International Workshop on Metamodels, Ontologies and Semantic Technologies  
a default graph and zero or more named graphs [W3C 2014]. 2 The ontology is not published http://taverna.incubator.apache.org/ documentation/scufl2/ontology 27-10-2015 17:00  ...  But, these efforts can be reduced by a data management workflow framework. We present the Linked Data Workflow Project ontology as the knowledge model for such a workflow framework.  ...  Acknowledgment This work was supported by the Brazilian Federal Agency for the Support and Evaluation of Graduate Education (CAPES/Brazil), under the program Sciences without Borders (Process number -18228  ... 
dblp:conf/ontobras/RautenbergEMA16 fatcat:2ymhiyv7fjg3ljnzaf6cawllfa

PrOnto: Privacy Ontology for Legal Reasoning [chapter]

Monica Palmirani, Michele Martoni, Arianna Rossi, Cesare Bartolini, Livio Robaldo
2018 Lecture Notes in Computer Science  
The methodology used here is based on legal theory analysis joined with ontological patterns.  ...  In this light, this paper presents a first draft of a legal ontology on the GDPR, called PrOnto, that has the goal of providing a legal knowledge modelling of the privacy agents, data types, types of processing  ...  .: The publishing workflow ontology (PWO), ISO (2016).  ... 
doi:10.1007/978-3-319-98349-3_11 fatcat:cxbylxwn6bfabg3xq5gckjcnwu

The SPAR Ontologies [chapter]

Silvio Peroni, David Shotton
2018 Lecture Notes in Computer Science  
domain, known as the SPAR (Semantic Publishing and Referencing) Ontologies.  ...  Over the past eight years, we have been involved in the development of a set of complementary and orthogonal ontologies that can be used for the description of the main areas of the scholarly publishing  ...  the creators of the FAIR* Review ontology, Idafen Santana-Pérez and María Poveda-Villalón.  ... 
doi:10.1007/978-3-030-00668-6_8 fatcat:nkgk3j3uivdonhuspnkc7xiery

A review of ontologies for describing scholarly and scientific documents

Almudena Ruiz-Iniesta, Óscar Corcho
2014 Extended Semantic Web Conference  
Several ontologies have been created in the last years for the semantic annotation of scholarly publications and scientific documents.  ...  This paper presents a classification and description of these state-of-the-art ontologies, together with the rationale behind the different approaches.  ...  Acknowledgments This work is supported by the FP7 European project Dr Inventor FP7-611383. Acknowledgments  ... 
dblp:conf/esws/Ruiz-IniestaC14 fatcat:dh46cyqeunexbhgvagzyc52foy

PhD Odyssey - Interweaving PhD Stories into the Semantic Web

Viet Bach Nguyen
2018 International Conference Knowledge Engineering and Knowledge Management  
The main focus of this project is knowledge engineering on the Semantic Web for the academic domain namely involving the creation of ontologies about research and campus activities of PhD students throughout  ...  The ultimate goal then is to create a game-like reference application that would feature PhD story sharing to enable the embroilment of academic stories into the Semantic Web.  ...  This research has been partially supported by the CSF under 18-23964S.  ... 
dblp:conf/ekaw/Nguyen18 fatcat:p4446v5spndqhpxis2byobkbcu

LODFlow

Sandro Rautenberg, Ivan Ermilov, Edgard Marx, Sören Auer, Axel-Cyrille N. Ngomo
2015 Proceedings of the 11th International Conference on Semantic Systems - SEMANTICS '15  
The LODFlow approach is based on a comprehensive knowledge model for describing the workflows and a workflow execution engine supporting systematic workflow execution, reporting, and exception handling  ...  The cost for producing Linked Data can be reduced by a workflow management system, which describes plans to systematically support the lifecycle of RDF datasets.  ...  Acknowledgment This work was supported by the Brazilian Federal Agency for the Support and Evaluation of Graduate Education (CAPES/Brazil), under the program Sciences without Borders (Process number -18228  ... 
doi:10.1145/2814864.2814882 dblp:conf/i-semantics/RautenbergEMAN15 fatcat:72ikgvvxr5hn7eql7h56ry5qkm

Towards FAIR protocols and workflows: the OpenPREDICT use case

Remzi Celebi, Joao Rebelo Moreira, Ahmed A. Hassan, Sandeep Ayyar, Lars Ridder, Tobias Kuhn, Michel Dumontier
2020 PeerJ Computer Science  
We apply and evaluate our approach on the case of the PREDICT workflow, a highly cited drug repurposing workflow.  ...  This semantic model consists of classes and relations from a number of existing ontologies, including Workflow4ever, PROV, EDAM, and BPMN.  ...  workflows (Correa Publio et al., 2018) , the Publishing Workflow Ontology (PWO) for workflows in scientific publications (Hartanto, Sarno & Ariyani, 2017) , and the Business Process Modelling Notation  ... 
doi:10.7717/peerj-cs.281 pmid:33816932 pmcid:PMC7924452 doaj:e3339c7f439d4843822785f5308945c9 fatcat:pxn7sw7mfreevex4thf3pnus4a

An Incremental Learning Method to Support the Annotation of Workflows with Data-to-Data Relations [chapter]

Enrico Daga, Mathieu d'Aquin, Aldo Gangemi, Enrico Motta
2016 Lecture Notes in Computer Science  
Workflow formalisations are often focused on the representation of a process with the primary objective to support execution.  ...  Our approach is centred on an incremental rule association mining technique that allows to compensate the cold start problem due to the lack of a training set of annotated workflows.  ...  Several models have been proposed for describing workflow executions, like the W3C PROV Model 5 , the Provenance Model for Workflows (OPMW) 6 and more recently the Publishing Workflow Ontology (PWO)  ... 
doi:10.1007/978-3-319-49004-5_9 fatcat:botrhfr6djaefhkfpvr3i3g6xe

Beware of the hierarchy - An analysis of ontology evolution and the materialisation impact for biomedical ontologies

Romana Pernisch, Daniele Dell'Aglio, Abraham Bernstein
2021 Journal of Web Semantics  
The impact on the materialisation is the same for the investigated ontologies, bringing us to the conclusion that the effect of changes on the materialisation can be generalised to other similar ontologies  ...  Investigating the impact of the evolution gives us insight into the editing behaviour but also signals ontology engineers and users how the ontology evolution is affecting other applications.  ...  Acknowledgements We thank the Swiss National Science Foundation for their partial support under contract number 407550_167177.  ... 
doi:10.1016/j.websem.2021.100658 fatcat:epzlliglzbdwzcpfl4kqdgjoci

Automatic Construction of a Semantic Knowledge Base from CEUR Workshop Proceedings [chapter]

Bahar Sateli, René Witte
2015 Communications in Computer and Information Science  
We present an automatic workflow that performs text segmentation and entity extraction from scientific literature to primarily address Task 2 of the Semantic Publishing Challenge 2015.  ...  The goal of Task 2 is to extract various information from full-text papers to represent the context in which a document is written, such as the affiliation of its authors and the corresponding funding  ...  examples: (8) "In this paper we introduce the Publishing Workflow Ontology (PWO). . . " (Vol1302 paper01) We designed hand-crafted rules to capture Contribution sentences that look at sequences of deictic  ... 
doi:10.1007/978-3-319-25518-7_11 fatcat:sjrbad3zbbedjlvvnaxgyffad4

Towards FAIR protocols and workflows: The OpenPREDICT case study [article]

Remzi Celebi, Joao Rebelo Moreira, Ahmed A. Hassan, Sandeep Ayyar, Lars Ridder, Tobias Kuhn, Michel Dumontier
2019 arXiv   pre-print
This semantic model consists of classes and relations from a number of existing ontologies, including Workflow4ever, PROV, EDAM, and BPMN.  ...  We apply and evaluate our approach on a case study that consists of making the PREDICT workflow, a highly cited drug repurposing workflow, open and FAIR.  ...  The PWO targets the workflow of scientific publications, while BPMN targets the specification of processes.  ... 
arXiv:1911.09531v1 fatcat:73agzpgoinaxbl6bjnrqmkalmm

CiTO + SWAN: The web semantics of bibliographic records, citations, evidence and discourse relationships

Paolo Ciccarese, David Shotton, Silvio Peroni, Tim Clark
2014 Semantic Web Journal  
), which we have developed by jointly adapting and evolving version 1.6 of CiTO, the Citation Typing Ontology, and version 1.2 of the SWAN Scientific Discourse Ontology (v1.2).  ...  In this paper we present CiTO + SWAN, a set of fully harmonized ontology modules resulting from the harmonization of CiTO (the Citation Typing Ontology) with SWAN (Semantic Web Applications in Neuromedicine  ...  Acknowledgements SWAN (PC and TC, Harvard): The development of SWAN was funded by generous grants from a philanthropic foundation that wishes to remain anonymous.  ... 
doi:10.3233/sw-130098 fatcat:nsftpwo65vhtdc477pxheq5etq

The role of metadata in reproducible computational research [article]

Jeremy Leipzig, Daniel Nüst, Charles Tapley Hoyt, Stian Soiland-Reyes, Karthik Ram, Jane Greenberg
2021 arXiv   pre-print
Reproducible computational research (RCR) is the keystone of the scientific method for in silico analyses, packaging the transformation of raw data to published results.  ...  In addition to its role in research integrity, RCR has the capacity to significantly accelerate evaluation and reuse.  ...  in workflow discovery and publishing.  ... 
arXiv:2006.08589v2 fatcat:txxkodvwezc6bcdngu3by6wnni

The Document Components Ontology (DoCO)

Alexandru Constantin, Silvio Peroni, Steve Pettifer, David Shotton, Fabio Vitali, Oscar Corcho
2016 Semantic Web Journal  
In addition to describing the formal description of the ontology, this paper showcases its utility in practice in a variety of our own applications and other activities of the Semantic Publishing community  ...  semantic publishing and the overall comprehension of documents by both users and machines.  ...  Acknowledgements We would like to thank Angelo Di Iorio and Francesco Poggi for their support and contribution for the development of the structural pattern theory summarised in Section 3.1, and for the  ... 
doi:10.3233/sw-150177 fatcat:3bkjh5e3ebelblzsacyvlfqlk4
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